miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30882 3' -62 NC_006552.1 + 19738 0.66 0.459605
Target:  5'- gUUGGCGCUGGcCGCUgCG-CGCCa- -3'
miRNA:   3'- gGACUGCGACCuGUGGgGCcGCGGcg -5'
30882 3' -62 NC_006552.1 + 12872 0.66 0.450355
Target:  5'- uCCUGcuGCGCcucGGCgACCUCGGCGgCGUg -3'
miRNA:   3'- -GGAC--UGCGac-CUG-UGGGGCCGCgGCG- -5'
30882 3' -62 NC_006552.1 + 24522 0.66 0.441209
Target:  5'- uCCaGGCGCU-GACGCCCaua-GCCGCc -3'
miRNA:   3'- -GGaCUGCGAcCUGUGGGgccgCGGCG- -5'
30882 3' -62 NC_006552.1 + 63349 0.66 0.441209
Target:  5'- aCCUaGACGaccaGGGCAaCCCGGU-CCGCa -3'
miRNA:   3'- -GGA-CUGCga--CCUGUgGGGCCGcGGCG- -5'
30882 3' -62 NC_006552.1 + 9387 0.66 0.432168
Target:  5'- aCUGccGCGCacGuCGCCCCGuGCGgCGCg -3'
miRNA:   3'- gGAC--UGCGacCuGUGGGGC-CGCgGCG- -5'
30882 3' -62 NC_006552.1 + 40779 0.66 0.423237
Target:  5'- gCUGGCGUgauuCGCCUCGGCGauCUGCa -3'
miRNA:   3'- gGACUGCGaccuGUGGGGCCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 22593 0.66 0.423237
Target:  5'- --aGAUGCUGGcguaCCgGGCGUCGCc -3'
miRNA:   3'- ggaCUGCGACCugugGGgCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 20793 0.66 0.423237
Target:  5'- --aGACGUUGGGCACCgUGauccCGCuCGCg -3'
miRNA:   3'- ggaCUGCGACCUGUGGgGCc---GCG-GCG- -5'
30882 3' -62 NC_006552.1 + 38459 0.66 0.42235
Target:  5'- uCCUGGaugcCGCUGGuggccgugccuuuGCGCCCCuGGaaaccgGCCGUg -3'
miRNA:   3'- -GGACU----GCGACC-------------UGUGGGG-CCg-----CGGCG- -5'
30882 3' -62 NC_006552.1 + 2642 0.67 0.414418
Target:  5'- gCUGGCGgcccuuCUGGGCuagggACCgCgCGGCGCCGa -3'
miRNA:   3'- gGACUGC------GACCUG-----UGG-G-GCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 54566 0.67 0.397122
Target:  5'- gCCUGGUGaucgUGGACACCgccaCGGCgaagGCCGCc -3'
miRNA:   3'- -GGACUGCg---ACCUGUGGg---GCCG----CGGCG- -5'
30882 3' -62 NC_006552.1 + 37761 0.67 0.397122
Target:  5'- uUCgGGCGCUGG-UAUCCCGcGCuCUGCa -3'
miRNA:   3'- -GGaCUGCGACCuGUGGGGC-CGcGGCG- -5'
30882 3' -62 NC_006552.1 + 2701 0.67 0.39627
Target:  5'- -gUGGCGCaUGGACGCUUCuucagcgcagcuuGGCGCCa- -3'
miRNA:   3'- ggACUGCG-ACCUGUGGGG-------------CCGCGGcg -5'
30882 3' -62 NC_006552.1 + 14694 0.67 0.38865
Target:  5'- uCCUGAUGCUGcACGCCaCGaGCGCUc- -3'
miRNA:   3'- -GGACUGCGACcUGUGGgGC-CGCGGcg -5'
30882 3' -62 NC_006552.1 + 60292 0.67 0.380298
Target:  5'- gCUGGCcCUGGGCaucgGCCCCugGGUGuuCCGCg -3'
miRNA:   3'- gGACUGcGACCUG----UGGGG--CCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 60336 0.68 0.363957
Target:  5'- cCCUGAUGCcGGACAUUgaguggCCGGCgaagggccaGUCGCu -3'
miRNA:   3'- -GGACUGCGaCCUGUGG------GGCCG---------CGGCG- -5'
30882 3' -62 NC_006552.1 + 15443 0.68 0.35597
Target:  5'- gCUGACGgUacGGAuucCGCUgCCGGCGCCaGCg -3'
miRNA:   3'- gGACUGCgA--CCU---GUGG-GGCCGCGG-CG- -5'
30882 3' -62 NC_006552.1 + 36168 0.68 0.332759
Target:  5'- --cGGCGCUGGccucgccaGCAUCgCCGGCacCCGCg -3'
miRNA:   3'- ggaCUGCGACC--------UGUGG-GGCCGc-GGCG- -5'
30882 3' -62 NC_006552.1 + 53528 0.68 0.325273
Target:  5'- aCCgcgcGAUGCcGGACGCCCaagccuGCGcCCGCa -3'
miRNA:   3'- -GGa---CUGCGaCCUGUGGGgc----CGC-GGCG- -5'
30882 3' -62 NC_006552.1 + 62955 0.68 0.325273
Target:  5'- gCUGACGCgcacgaACUggCCGGCGCCGUu -3'
miRNA:   3'- gGACUGCGaccug-UGG--GGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.