miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30923 3' -59.1 NC_006552.1 + 43973 0.65 0.590818
Target:  5'- aGCAGgaacuugucgaUGCCGCugucggcgaccagGGCCaGGCGAACcucGCCg -3'
miRNA:   3'- -CGUC-----------GCGGCG-------------UCGGgCCGCUUGu--UGG- -5'
30923 3' -59.1 NC_006552.1 + 21992 0.65 0.590818
Target:  5'- uGCAGCGCCcCAgucGCCUgaucgcugacgguGGCGGcguccuCGACCa -3'
miRNA:   3'- -CGUCGCGGcGU---CGGG-------------CCGCUu-----GUUGG- -5'
30923 3' -59.1 NC_006552.1 + 33694 0.66 0.581362
Target:  5'- uCGGCGaCGaAG-CCGGCGGGCAACg -3'
miRNA:   3'- cGUCGCgGCgUCgGGCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 25304 0.66 0.581362
Target:  5'- aGCGGUGUCGgucggcguccaAGCUgGGCGggUAGCg -3'
miRNA:   3'- -CGUCGCGGCg----------UCGGgCCGCuuGUUGg -5'
30923 3' -59.1 NC_006552.1 + 12363 0.66 0.581362
Target:  5'- -aGGCGUCGCGGCgCGcuucuGC-AACGGCCu -3'
miRNA:   3'- cgUCGCGGCGUCGgGC-----CGcUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 20655 0.66 0.581362
Target:  5'- --cGCGuUCGCgGGCaCgGGCGAACAGCg -3'
miRNA:   3'- cguCGC-GGCG-UCG-GgCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 6754 0.66 0.581362
Target:  5'- aGUuGCGCCGCaccgucgaucaGGUcuucggcgucuUCGGCGAACGGCa -3'
miRNA:   3'- -CGuCGCGGCG-----------UCG-----------GGCCGCUUGUUGg -5'
30923 3' -59.1 NC_006552.1 + 14735 0.66 0.581362
Target:  5'- --cGCGCCGCGguGCUCGGCcuuGAucuGCGGCa -3'
miRNA:   3'- cguCGCGGCGU--CGGGCCG---CU---UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 58618 0.66 0.580314
Target:  5'- uCGGUgGCCGC-GCCgGGCaGAcugaaccGCGACCg -3'
miRNA:   3'- cGUCG-CGGCGuCGGgCCG-CU-------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 20536 0.66 0.578217
Target:  5'- cCGGCcuuGCuCGCGcaccacaucuaccuGCCUGGCGAGCAuCCc -3'
miRNA:   3'- cGUCG---CG-GCGU--------------CGGGCCGCUUGUuGG- -5'
30923 3' -59.1 NC_006552.1 + 26244 0.66 0.575076
Target:  5'- --uGCGCCGguCGGCCCagcuccgguagcgucGGCaGGAUGACCg -3'
miRNA:   3'- cguCGCGGC--GUCGGG---------------CCG-CUUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 32693 0.66 0.570893
Target:  5'- uGguGuCGUCGCcGgCCGGCGcGgGGCCg -3'
miRNA:   3'- -CguC-GCGGCGuCgGGCCGCuUgUUGG- -5'
30923 3' -59.1 NC_006552.1 + 54556 0.66 0.56047
Target:  5'- cCGGCGCaa-GGCCUGGUGAucguggACAccGCCa -3'
miRNA:   3'- cGUCGCGgcgUCGGGCCGCU------UGU--UGG- -5'
30923 3' -59.1 NC_006552.1 + 61193 0.66 0.56047
Target:  5'- aGCcuGCGCCGauauCGGCUgcuggGGCGAcACAGCCa -3'
miRNA:   3'- -CGu-CGCGGC----GUCGGg----CCGCU-UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 29494 0.66 0.56047
Target:  5'- gGCGGCGCCGaacaCuuGGUGcGACGAUCc -3'
miRNA:   3'- -CGUCGCGGCguc-GggCCGC-UUGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 15642 0.66 0.56047
Target:  5'- gGUGGCGCUGCucauccugcuGGuCCuCGGCGAggaucGCAGCa -3'
miRNA:   3'- -CGUCGCGGCG----------UC-GG-GCCGCU-----UGUUGg -5'
30923 3' -59.1 NC_006552.1 + 10624 0.66 0.56047
Target:  5'- -uGGCGCCaGCagucucaccGGCCaCGGCGAuGCuGGCCu -3'
miRNA:   3'- cgUCGCGG-CG---------UCGG-GCCGCU-UG-UUGG- -5'
30923 3' -59.1 NC_006552.1 + 30435 0.66 0.559431
Target:  5'- cGCAGC-CCGCAGUugaucgaguaguaCCGGCuaacuccuGCGAUCg -3'
miRNA:   3'- -CGUCGcGGCGUCG-------------GGCCGcu------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 51029 0.66 0.559431
Target:  5'- -gAGCGCC-UGGCcgaugCCGGCGAucccgagACAGCCc -3'
miRNA:   3'- cgUCGCGGcGUCG-----GGCCGCU-------UGUUGG- -5'
30923 3' -59.1 NC_006552.1 + 22404 0.66 0.559431
Target:  5'- cGCugauGCGCgCGguGCUucgcugaCGGCcGACAACCc -3'
miRNA:   3'- -CGu---CGCG-GCguCGG-------GCCGcUUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.