Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30923 | 3' | -59.1 | NC_006552.1 | + | 43973 | 0.65 | 0.590818 |
Target: 5'- aGCAGgaacuugucgaUGCCGCugucggcgaccagGGCCaGGCGAACcucGCCg -3' miRNA: 3'- -CGUC-----------GCGGCG-------------UCGGgCCGCUUGu--UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 21992 | 0.65 | 0.590818 |
Target: 5'- uGCAGCGCCcCAgucGCCUgaucgcugacgguGGCGGcguccuCGACCa -3' miRNA: 3'- -CGUCGCGGcGU---CGGG-------------CCGCUu-----GUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 6754 | 0.66 | 0.581362 |
Target: 5'- aGUuGCGCCGCaccgucgaucaGGUcuucggcgucuUCGGCGAACGGCa -3' miRNA: 3'- -CGuCGCGGCG-----------UCG-----------GGCCGCUUGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 20655 | 0.66 | 0.581362 |
Target: 5'- --cGCGuUCGCgGGCaCgGGCGAACAGCg -3' miRNA: 3'- cguCGC-GGCG-UCG-GgCCGCUUGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 12363 | 0.66 | 0.581362 |
Target: 5'- -aGGCGUCGCGGCgCGcuucuGC-AACGGCCu -3' miRNA: 3'- cgUCGCGGCGUCGgGC-----CGcUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 25304 | 0.66 | 0.581362 |
Target: 5'- aGCGGUGUCGgucggcguccaAGCUgGGCGggUAGCg -3' miRNA: 3'- -CGUCGCGGCg----------UCGGgCCGCuuGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 14735 | 0.66 | 0.581362 |
Target: 5'- --cGCGCCGCGguGCUCGGCcuuGAucuGCGGCa -3' miRNA: 3'- cguCGCGGCGU--CGGGCCG---CU---UGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 33694 | 0.66 | 0.581362 |
Target: 5'- uCGGCGaCGaAG-CCGGCGGGCAACg -3' miRNA: 3'- cGUCGCgGCgUCgGGCCGCUUGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 58618 | 0.66 | 0.580314 |
Target: 5'- uCGGUgGCCGC-GCCgGGCaGAcugaaccGCGACCg -3' miRNA: 3'- cGUCG-CGGCGuCGGgCCG-CU-------UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 20536 | 0.66 | 0.578217 |
Target: 5'- cCGGCcuuGCuCGCGcaccacaucuaccuGCCUGGCGAGCAuCCc -3' miRNA: 3'- cGUCG---CG-GCGU--------------CGGGCCGCUUGUuGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 26244 | 0.66 | 0.575076 |
Target: 5'- --uGCGCCGguCGGCCCagcuccgguagcgucGGCaGGAUGACCg -3' miRNA: 3'- cguCGCGGC--GUCGGG---------------CCG-CUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 32693 | 0.66 | 0.570893 |
Target: 5'- uGguGuCGUCGCcGgCCGGCGcGgGGCCg -3' miRNA: 3'- -CguC-GCGGCGuCgGGCCGCuUgUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 10624 | 0.66 | 0.56047 |
Target: 5'- -uGGCGCCaGCagucucaccGGCCaCGGCGAuGCuGGCCu -3' miRNA: 3'- cgUCGCGG-CG---------UCGG-GCCGCU-UG-UUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 15642 | 0.66 | 0.56047 |
Target: 5'- gGUGGCGCUGCucauccugcuGGuCCuCGGCGAggaucGCAGCa -3' miRNA: 3'- -CGUCGCGGCG----------UC-GG-GCCGCU-----UGUUGg -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 29494 | 0.66 | 0.56047 |
Target: 5'- gGCGGCGCCGaacaCuuGGUGcGACGAUCc -3' miRNA: 3'- -CGUCGCGGCguc-GggCCGC-UUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 61193 | 0.66 | 0.56047 |
Target: 5'- aGCcuGCGCCGauauCGGCUgcuggGGCGAcACAGCCa -3' miRNA: 3'- -CGu-CGCGGC----GUCGGg----CCGCU-UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 54556 | 0.66 | 0.56047 |
Target: 5'- cCGGCGCaa-GGCCUGGUGAucguggACAccGCCa -3' miRNA: 3'- cGUCGCGgcgUCGGGCCGCU------UGU--UGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 51029 | 0.66 | 0.559431 |
Target: 5'- -gAGCGCC-UGGCcgaugCCGGCGAucccgagACAGCCc -3' miRNA: 3'- cgUCGCGGcGUCG-----GGCCGCU-------UGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 22404 | 0.66 | 0.559431 |
Target: 5'- cGCugauGCGCgCGguGCUucgcugaCGGCcGACAACCc -3' miRNA: 3'- -CGu---CGCG-GCguCGG-------GCCGcUUGUUGG- -5' |
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30923 | 3' | -59.1 | NC_006552.1 | + | 30435 | 0.66 | 0.559431 |
Target: 5'- cGCAGC-CCGCAGUugaucgaguaguaCCGGCuaacuccuGCGAUCg -3' miRNA: 3'- -CGUCGcGGCGUCG-------------GGCCGcu------UGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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