miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 6493 0.65 0.828803
Target:  5'- cGCCgcGCCGACggaaccUCGCaggugagcggucguCCCGGGAUCGCc- -3'
miRNA:   3'- -UGG--UGGCUG------AGUG--------------GGGUCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 128237 0.66 0.822975
Target:  5'- uCCAgCGGCUgGgCCCAGaGGUCcuGCAGg -3'
miRNA:   3'- uGGUgGCUGAgUgGGGUC-CUAG--CGUC- -5'
30991 3' -58.5 NC_006560.1 + 81041 0.66 0.822975
Target:  5'- cACCGCgGcgcGCUCGCCCagCGGGugGUCGUGGg -3'
miRNA:   3'- -UGGUGgC---UGAGUGGG--GUCC--UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149990 0.66 0.822975
Target:  5'- cGCUACCGggGC-CGCgCUCGGGAcCGCGGg -3'
miRNA:   3'- -UGGUGGC--UGaGUG-GGGUCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 43093 0.66 0.822975
Target:  5'- uCCACCGcCUCccGCCCCAgccccgacggccGGuccGUCGCGGc -3'
miRNA:   3'- uGGUGGCuGAG--UGGGGU------------CC---UAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 119388 0.66 0.817913
Target:  5'- aACCGCCGGCUgCAcgcccucguggucuuCCCCGGcGGcuUCGCGu -3'
miRNA:   3'- -UGGUGGCUGA-GU---------------GGGGUC-CU--AGCGUc -5'
30991 3' -58.5 NC_006560.1 + 82958 0.66 0.814506
Target:  5'- uACCGCCu-CUCGCCCCGauGGGcCGCc- -3'
miRNA:   3'- -UGGUGGcuGAGUGGGGU--CCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 122487 0.66 0.814506
Target:  5'- -gCACCcGCUCcCCCCagccGGGAUCGCc- -3'
miRNA:   3'- ugGUGGcUGAGuGGGG----UCCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 126187 0.66 0.814506
Target:  5'- gUCACC-ACUCGCCCaCGGucUCGUAGa -3'
miRNA:   3'- uGGUGGcUGAGUGGG-GUCcuAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 2234 0.66 0.814506
Target:  5'- gGCCGCagCGGCgcacccagGCCCCAGcGcgCGCAGg -3'
miRNA:   3'- -UGGUG--GCUGag------UGGGGUC-CuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 32691 0.66 0.814506
Target:  5'- gGCCgggGCCGgggGCUcCGCCCgAGGGcgCGCGGg -3'
miRNA:   3'- -UGG---UGGC---UGA-GUGGGgUCCUa-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 82595 0.66 0.81365
Target:  5'- gGCCG-CGGCUCGCCCCGaggccccGGAcgGCGGc -3'
miRNA:   3'- -UGGUgGCUGAGUGGGGU-------CCUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 149292 0.66 0.805878
Target:  5'- cGCC-CCGGCcCGCCCCGGcccaaccCGCGGa -3'
miRNA:   3'- -UGGuGGCUGaGUGGGGUCcua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 35243 0.66 0.805878
Target:  5'- gGCCGCCGcCgCACCUgCGGGGccgCGCGGc -3'
miRNA:   3'- -UGGUGGCuGaGUGGG-GUCCUa--GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 67796 0.66 0.803259
Target:  5'- gGCCGCCGcGC-CGCCCCccgAGGAuaaccggagccgggUCGCGu -3'
miRNA:   3'- -UGGUGGC-UGaGUGGGG---UCCU--------------AGCGUc -5'
30991 3' -58.5 NC_006560.1 + 119311 0.66 0.797097
Target:  5'- cGCCGCCcaauGC-CGCCCgCAGGGUCuGCGa -3'
miRNA:   3'- -UGGUGGc---UGaGUGGG-GUCCUAG-CGUc -5'
30991 3' -58.5 NC_006560.1 + 88909 0.66 0.797097
Target:  5'- cGCCgGCCGGCcgugccugUCGCuCCCGGGcgCGCu- -3'
miRNA:   3'- -UGG-UGGCUG--------AGUG-GGGUCCuaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 77602 0.66 0.797097
Target:  5'- gGCCGCCGAgCUguaCGCCgCCcuGGUCGCGa -3'
miRNA:   3'- -UGGUGGCU-GA---GUGG-GGucCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 24675 0.66 0.797097
Target:  5'- cGCCGCCGGCcgcCGCCUCGucGUCGUGGa -3'
miRNA:   3'- -UGGUGGCUGa--GUGGGGUccUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 22640 0.66 0.797097
Target:  5'- cGCCGCCGAgacgggcgUCGCCgCCGGG--CGCAGc -3'
miRNA:   3'- -UGGUGGCUg-------AGUGG-GGUCCuaGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.