miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 145277 0.66 0.451382
Target:  5'- cGGCCccCCGGCCCCCuGGGCGggccucggccccCacccuccgcccccgcGGGGGg -3'
miRNA:   3'- -CUGGu-GGCUGGGGGcCCCGC------------G---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 119572 0.66 0.448873
Target:  5'- cGCCGCCGgacagcgcccgGCCCCgcccugcuccccggCGGGGCccgagggccccgacgGCGGcGGGg -3'
miRNA:   3'- cUGGUGGC-----------UGGGG--------------GCCCCG---------------CGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 78314 0.66 0.448039
Target:  5'- -uCUACCGGCCCUCGGGccaGCGCGuGcuGGu -3'
miRNA:   3'- cuGGUGGCUGGGGGCCC---CGCGC-Cc-CC- -5'
30991 5' -67.8 NC_006560.1 + 20045 0.66 0.448039
Target:  5'- cGCCcgucguuCCGAgCCaUCGGGGCGUuccgacGGGGGc -3'
miRNA:   3'- cUGGu------GGCUgGG-GGCCCCGCG------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5614 0.66 0.448039
Target:  5'- cGGCCGCCcGCCucauauacCCCGGccGGCGaCGGGcGGn -3'
miRNA:   3'- -CUGGUGGcUGG--------GGGCC--CCGC-GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 24917 0.66 0.448039
Target:  5'- cGCCGCCGccGCgCCUGGGcCGCGGcGGc -3'
miRNA:   3'- cUGGUGGC--UGgGGGCCCcGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 43748 0.66 0.448039
Target:  5'- cGGCCGCCGcgguGCgCCCCGu-GCGCGGGccGGc -3'
miRNA:   3'- -CUGGUGGC----UG-GGGGCccCGCGCCC--CC- -5'
30991 5' -67.8 NC_006560.1 + 26019 0.66 0.44554
Target:  5'- gGGCCGCggggGACCCgCGcgcacggucccgucGGGCGCccGGGGGc -3'
miRNA:   3'- -CUGGUGg---CUGGGgGC--------------CCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 79445 0.66 0.44305
Target:  5'- cGACC-CCGcuccgcggcgcgugaGCCCCCGGcGGCGCGuGa- -3'
miRNA:   3'- -CUGGuGGC---------------UGGGGGCC-CCGCGCcCcc -5'
30991 5' -67.8 NC_006560.1 + 147545 0.66 0.439741
Target:  5'- uGACgGgCUGGCCCaugCGGGcGgGCGGGGa -3'
miRNA:   3'- -CUGgU-GGCUGGGg--GCCC-CgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 1094 0.66 0.439741
Target:  5'- -cCCGCCaGGCuCCCCGGcGGCGCGa--- -3'
miRNA:   3'- cuGGUGG-CUG-GGGGCC-CCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 92427 0.66 0.439741
Target:  5'- -uCCACgaGCaCCCCGGGGCGUGGa-- -3'
miRNA:   3'- cuGGUGgcUG-GGGGCCCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 112398 0.66 0.439741
Target:  5'- cGACCuGCCgGGCCCCCGGGcccccccCGCcGGGc -3'
miRNA:   3'- -CUGG-UGG-CUGGGGGCCCc------GCGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 5 0.66 0.439741
Target:  5'- --gCGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3'
miRNA:   3'- cugGUGGCu---GGGG--GCCCCG---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 666 0.66 0.439741
Target:  5'- cACC-CCGGCgCgCCCGcGGCGCGGGc- -3'
miRNA:   3'- cUGGuGGCUG-G-GGGCcCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 15592 0.66 0.439741
Target:  5'- aGGCCAgguCCuggGGCCacaCGGGGUccaGCGGGGGc -3'
miRNA:   3'- -CUGGU---GG---CUGGgg-GCCCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 25961 0.66 0.439741
Target:  5'- gGGCCGCgGggggcgaggGCCgCgGGGGgcgagggcCGCGGGGGg -3'
miRNA:   3'- -CUGGUGgC---------UGGgGgCCCC--------GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 148371 0.66 0.437269
Target:  5'- aGGCCGCgCGaggGCUCCauggguccggggagCGGGGaCGCGGGGc -3'
miRNA:   3'- -CUGGUG-GC---UGGGG--------------GCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 80416 0.66 0.437269
Target:  5'- cGACCccaaCGACCCCCcaacgcccgaggcgGGGGCcCGGGa- -3'
miRNA:   3'- -CUGGug--GCUGGGGG--------------CCCCGcGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 71967 0.66 0.431532
Target:  5'- gGGCuCGCCGGCCUUCGucgcgaaggugcGGGC-CGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGGGGGC------------CCCGcGCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.