miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 145088 0.69 0.277682
Target:  5'- gGGCCucCCGAgCCCCUGGGGCagcccccGCcccccgugucccugcGGGGGg -3'
miRNA:   3'- -CUGGu-GGCU-GGGGGCCCCG-------CG---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 144944 0.67 0.347538
Target:  5'- gGACC-CCGAgaCCCCGGccGGCGCGccGGGc -3'
miRNA:   3'- -CUGGuGGCUg-GGGGCC--CCGCGCc-CCC- -5'
30991 5' -67.8 NC_006560.1 + 144786 0.66 0.399618
Target:  5'- uGCCcCuCGGCCCCCGGcGGCuaccccGCGGGc- -3'
miRNA:   3'- cUGGuG-GCUGGGGGCC-CCG------CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 144236 0.66 0.407455
Target:  5'- -cCCGCCG-CCucuccuccugCCCGGGcccgcccgcguGCGCGGGGa -3'
miRNA:   3'- cuGGUGGCuGG----------GGGCCC-----------CGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 144191 0.7 0.257958
Target:  5'- uGACC-CCGACCCCCGGgccGGCGCccgccucccugccGGcGGc -3'
miRNA:   3'- -CUGGuGGCUGGGGGCC---CCGCG-------------CC-CCc -5'
30991 5' -67.8 NC_006560.1 + 144109 0.67 0.376694
Target:  5'- -uCCGCCGGCCCcugccuggcuCCGGcGGCcGCGGcGGc -3'
miRNA:   3'- cuGGUGGCUGGG----------GGCC-CCG-CGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 143439 0.69 0.294188
Target:  5'- -cCCGCgGuACgCCCGGGGCGaGGGGc -3'
miRNA:   3'- cuGGUGgC-UGgGGGCCCCGCgCCCCc -5'
30991 5' -67.8 NC_006560.1 + 142755 0.77 0.080463
Target:  5'- cGCC-CgGGCCCCgGGGGCGCGGGa- -3'
miRNA:   3'- cUGGuGgCUGGGGgCCCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 142708 0.71 0.221463
Target:  5'- cGGCCgGCCGcGgCCCCGaGGCGCccGGGGGg -3'
miRNA:   3'- -CUGG-UGGC-UgGGGGCcCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 142512 0.77 0.084478
Target:  5'- gGGCC-CCGgcGCCCCCGGGGCGgGGccccGGGc -3'
miRNA:   3'- -CUGGuGGC--UGGGGGCCCCGCgCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 142422 0.67 0.361912
Target:  5'- gGACC-CCGGgCCCCGccgcccGGCGCGGcGGc -3'
miRNA:   3'- -CUGGuGGCUgGGGGCc-----CCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 142347 0.71 0.211739
Target:  5'- gGGCC-CCGcgcgcGCCUCgGGGGC-CGGGGGc -3'
miRNA:   3'- -CUGGuGGC-----UGGGGgCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 141609 0.7 0.258521
Target:  5'- cGCCGCgGcCCCgCCGGGGgaggaaGgGGGGGg -3'
miRNA:   3'- cUGGUGgCuGGG-GGCCCCg-----CgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 140460 0.68 0.333577
Target:  5'- gGGCUugCGAUCgCgGcGGGC-CGGGGGg -3'
miRNA:   3'- -CUGGugGCUGGgGgC-CCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 139294 0.66 0.407455
Target:  5'- nGGgCACCggGugCCCCGugggcgccucGGGCGCGGGa- -3'
miRNA:   3'- -CUgGUGG--CugGGGGC----------CCCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 139256 0.81 0.043885
Target:  5'- cGCC-CgGACCCCCGGgggcgcgcggucgucGGCGCGGGGGg -3'
miRNA:   3'- cUGGuGgCUGGGGGCC---------------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 139061 0.67 0.384236
Target:  5'- cGGCCcguGCCGGgCCCgGGGGCGCGc--- -3'
miRNA:   3'- -CUGG---UGGCUgGGGgCCCCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 138568 0.69 0.264211
Target:  5'- -cCCGCCGuCuCCCCGGcGaGCGCGGagacGGGg -3'
miRNA:   3'- cuGGUGGCuG-GGGGCC-C-CGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 137230 0.67 0.354674
Target:  5'- cGACUucaaGACgCUgGGGGCGCGGGcGGc -3'
miRNA:   3'- -CUGGugg-CUGgGGgCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 137203 0.66 0.407455
Target:  5'- -cCCGCCGGCggCCGGGGaGCGGGc- -3'
miRNA:   3'- cuGGUGGCUGggGGCCCCgCGCCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.