miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 3' -51.7 NC_006560.1 + 103022 0.65 0.992312
Target:  5'- cUCCGCGCccGGucgacgcGCGGGGcGCGg -3'
miRNA:   3'- -GGGCGCGa-CUuauuaauUGCCCC-CGC- -5'
30992 3' -51.7 NC_006560.1 + 148373 0.66 0.991653
Target:  5'- gCCGCGCgagggcuccaUGggUccGGggAGCGGGGacGCGg -3'
miRNA:   3'- gGGCGCG----------ACuuA--UUaaUUGCCCC--CGC- -5'
30992 3' -51.7 NC_006560.1 + 114013 0.66 0.991653
Target:  5'- gCCGCGCgGAAacGUggaccugGGCGuGGGGUa -3'
miRNA:   3'- gGGCGCGaCUUauUAa------UUGC-CCCCGc -5'
30992 3' -51.7 NC_006560.1 + 73651 0.66 0.991653
Target:  5'- -aCGCGCUGGcgAGgagcgugGACGcGGuGGCGc -3'
miRNA:   3'- ggGCGCGACUuaUUaa-----UUGC-CC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 62965 0.66 0.991653
Target:  5'- gCUGCGCcGAGgc---GACGGuGGGCa -3'
miRNA:   3'- gGGCGCGaCUUauuaaUUGCC-CCCGc -5'
30992 3' -51.7 NC_006560.1 + 41663 0.66 0.991653
Target:  5'- gCCCGCGUccGGUGccgucGCGGGcGGCGc -3'
miRNA:   3'- -GGGCGCGacUUAUuaau-UGCCC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 61533 0.66 0.991653
Target:  5'- ----aGCUGGGggcgggGGCGGGGGCGc -3'
miRNA:   3'- gggcgCGACUUauuaa-UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 143438 0.66 0.990581
Target:  5'- uCCCGCGgUacgcccggGGCGaGGGGCGa -3'
miRNA:   3'- -GGGCGCgAcuuauuaaUUGC-CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 28391 0.66 0.990455
Target:  5'- gCCCGcCGUUGGuccgcgGGUUgGGCcGGGGCGg -3'
miRNA:   3'- -GGGC-GCGACUua----UUAA-UUGcCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 58958 0.66 0.990455
Target:  5'- -aCGCGCUGucgGAgcguGCGcaGGGGCGu -3'
miRNA:   3'- ggGCGCGACuuaUUaau-UGC--CCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 112277 0.66 0.990455
Target:  5'- gCCGCcuccGCUGggUG----GCGGaGGGCc -3'
miRNA:   3'- gGGCG----CGACuuAUuaauUGCC-CCCGc -5'
30992 3' -51.7 NC_006560.1 + 106638 0.66 0.990329
Target:  5'- uCCUGCGCgcgcccgccgAGCGGGGGg- -3'
miRNA:   3'- -GGGCGCGacuuauuaa-UUGCCCCCgc -5'
30992 3' -51.7 NC_006560.1 + 46199 0.66 0.990329
Target:  5'- cCCCGCGUcgcgccgu---UGGGGGCGa -3'
miRNA:   3'- -GGGCGCGacuuauuaauuGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 91538 0.66 0.989266
Target:  5'- gCUCGCGCUGGAcccgcacgcCGGcGGGCc -3'
miRNA:   3'- -GGGCGCGACUUauuaauu--GCC-CCCGc -5'
30992 3' -51.7 NC_006560.1 + 127750 0.66 0.989127
Target:  5'- gCCC-UGCUGcGGUGGUUGA-GGGaGGCGa -3'
miRNA:   3'- -GGGcGCGAC-UUAUUAAUUgCCC-CCGC- -5'
30992 3' -51.7 NC_006560.1 + 142273 0.66 0.989127
Target:  5'- cCCCG-GCaaccgGGAUAAaaGGCGGcGGGCGc -3'
miRNA:   3'- -GGGCgCGa----CUUAUUaaUUGCC-CCCGC- -5'
30992 3' -51.7 NC_006560.1 + 3411 0.66 0.989127
Target:  5'- -gCGCGCcGGcgGGcgGGCGGcGGGCGc -3'
miRNA:   3'- ggGCGCGaCUuaUUaaUUGCC-CCCGC- -5'
30992 3' -51.7 NC_006560.1 + 25785 0.66 0.989127
Target:  5'- gCCGCGUcGAucgGAgga--GGGGGCGc -3'
miRNA:   3'- gGGCGCGaCUua-UUaauugCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 118018 0.66 0.989127
Target:  5'- gCCGCGgcgcacCUGGcgGcggggcucGGCGGGGGCGg -3'
miRNA:   3'- gGGCGC------GACUuaUuaa-----UUGCCCCCGC- -5'
30992 3' -51.7 NC_006560.1 + 118490 0.66 0.989127
Target:  5'- gCCCGCGCUcgcucgugGAGUGGcUGgaccGCGGGugggaGGCGc -3'
miRNA:   3'- -GGGCGCGA--------CUUAUUaAU----UGCCC-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.