miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 5' -50.1 NC_006560.1 + 16871 0.66 0.998182
Target:  5'- cGgGUCCCCGgc-------CAGGACCu -3'
miRNA:   3'- cCgCAGGGGCacuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 15767 0.66 0.998182
Target:  5'- gGGCGaCUCCGggcccgGGGgccggCAGGGCCc -3'
miRNA:   3'- -CCGCaGGGGCa-----CUUauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 31668 0.66 0.998182
Target:  5'- cGUGUCCCCGcccGAGUAcc-CGGGAgaccCCg -3'
miRNA:   3'- cCGCAGGGGCa--CUUAUuaaGUCCU----GG- -5'
30992 5' -50.1 NC_006560.1 + 146936 0.66 0.997828
Target:  5'- uGCGUCUgggCC-UGGGccUGcgUCAGGGCCg -3'
miRNA:   3'- cCGCAGG---GGcACUU--AUuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 121919 0.66 0.997828
Target:  5'- cGCG-CCCCGcgGGAUGGaccgCGGGcCCg -3'
miRNA:   3'- cCGCaGGGGCa-CUUAUUaa--GUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 16963 0.66 0.997462
Target:  5'- aGGCG-CCCCGaagucccccaggcaGAUGuccUCGGGGCCg -3'
miRNA:   3'- -CCGCaGGGGCac------------UUAUua-AGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 100778 0.66 0.997418
Target:  5'- cGGCGUcggaCCCCucGGGgca-UCGGGGCCg -3'
miRNA:   3'- -CCGCA----GGGGcaCUUauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 105573 0.66 0.997418
Target:  5'- cGCccCCCCGUGGAUcccUCGGGgggcGCCg -3'
miRNA:   3'- cCGcaGGGGCACUUAuuaAGUCC----UGG- -5'
30992 5' -50.1 NC_006560.1 + 39299 0.66 0.997374
Target:  5'- cGGCGUugugUCCCGggccgGGcggggcgGUGGggCGGGGCCg -3'
miRNA:   3'- -CCGCA----GGGGCa----CU-------UAUUaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 86667 0.66 0.997374
Target:  5'- cGGCGUCCgcgCCGagcgacagcgugcUGAAgcagaGGUUguGGGCCu -3'
miRNA:   3'- -CCGCAGG---GGC-------------ACUUa----UUAAguCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 130847 0.66 0.997374
Target:  5'- uGGUG-CCCCGgggcuacGAGUAcuucgcgGUUCGGG-CCg -3'
miRNA:   3'- -CCGCaGGGGCa------CUUAU-------UAAGUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 64961 0.66 0.997283
Target:  5'- cGGCGgCCUCGUcccccucggCGGGGCCg -3'
miRNA:   3'- -CCGCaGGGGCAcuuauuaa-GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 88345 0.66 0.996946
Target:  5'- uGGCGUCCaggaaccggCCGUGGGcgcgcCAGGcACCc -3'
miRNA:   3'- -CCGCAGG---------GGCACUUauuaaGUCC-UGG- -5'
30992 5' -50.1 NC_006560.1 + 56957 0.66 0.996946
Target:  5'- cGGCgGUCCCCagcaUGGc--GUaCAGGGCCg -3'
miRNA:   3'- -CCG-CAGGGGc---ACUuauUAaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 12696 0.66 0.996946
Target:  5'- uGGCGcCCgUGUGGucggcggggGUGGgggCGGGGCCc -3'
miRNA:   3'- -CCGCaGGgGCACU---------UAUUaa-GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 10127 0.66 0.996946
Target:  5'- cGGUGUCCCCcG-GGcUAAa-CAGGAUCg -3'
miRNA:   3'- -CCGCAGGGG-CaCUuAUUaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 63313 0.66 0.996895
Target:  5'- cGUGUCCCCGgcggcacUGGGgcGUgggCuGGGCCg -3'
miRNA:   3'- cCGCAGGGGC-------ACUUauUAa--GuCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 50582 0.66 0.996843
Target:  5'- cGGCGUgccuguaCCCGUGccccca-CGGGGCCu -3'
miRNA:   3'- -CCGCAg------GGGCACuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 148549 0.66 0.996404
Target:  5'- uGGUGUCCCCGgcguuAUAugcgcCGGGAgCCc -3'
miRNA:   3'- -CCGCAGGGGCacu--UAUuaa--GUCCU-GG- -5'
30992 5' -50.1 NC_006560.1 + 134481 0.66 0.996404
Target:  5'- cGCgGUCCCCGUcGuucuugcggcccagCAGGACCu -3'
miRNA:   3'- cCG-CAGGGGCA-Cuuauuaa-------GUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.