miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 3' -55.1 NC_006560.1 + 3935 0.66 0.943307
Target:  5'- cGGGGGCGgcgccgcggucggcgGCGaGGGcGGCCGCCa -3'
miRNA:   3'- cCUCUCGUaaa------------CGUaCCC-CUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 56035 0.66 0.941932
Target:  5'- cGAG-GCGc-UGCGUGGGGAagGUCCc -3'
miRNA:   3'- cCUCuCGUaaACGUACCCCUggCGGG- -5'
30993 3' -55.1 NC_006560.1 + 117705 0.66 0.941932
Target:  5'- gGGAGguacuGGCGccUGCGgucccGGGGCgGCCCg -3'
miRNA:   3'- -CCUC-----UCGUaaACGUac---CCCUGgCGGG- -5'
30993 3' -55.1 NC_006560.1 + 114861 0.66 0.941932
Target:  5'- gGGAGGgGCGgagacGCGcgGGGGucGCCGCUCc -3'
miRNA:   3'- -CCUCU-CGUaaa--CGUa-CCCC--UGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 26497 0.66 0.941932
Target:  5'- cGGGGGGCGggcGCGcgagggggcGGGGGCCGUg- -3'
miRNA:   3'- -CCUCUCGUaaaCGUa--------CCCCUGGCGgg -5'
30993 3' -55.1 NC_006560.1 + 6606 0.66 0.941932
Target:  5'- cGGGGGCucggggGCucgGGGGACCggggGCUCg -3'
miRNA:   3'- cCUCUCGuaaa--CGua-CCCCUGG----CGGG- -5'
30993 3' -55.1 NC_006560.1 + 102840 0.66 0.941932
Target:  5'- aGGGGGGCGgc-GguUGGGGAauggcgaGCCg -3'
miRNA:   3'- -CCUCUCGUaaaCguACCCCUgg-----CGGg -5'
30993 3' -55.1 NC_006560.1 + 47284 0.66 0.941932
Target:  5'- -aAGAGCGccUGCGcGGcGGACgCGCUCg -3'
miRNA:   3'- ccUCUCGUaaACGUaCC-CCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 147293 0.66 0.941932
Target:  5'- cGGGGGGCucuggcggGCgccgggcggaagGUGGGGuCCGCUg -3'
miRNA:   3'- -CCUCUCGuaaa----CG------------UACCCCuGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 64841 0.66 0.941932
Target:  5'- -aGGAGCAg--GC-UGGGGucgcgcgcgccgGCgCGCCCa -3'
miRNA:   3'- ccUCUCGUaaaCGuACCCC------------UG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 90459 0.66 0.941469
Target:  5'- gGGGGGGCGggacgGCG-GGGccgcaaaGGCgGCCCa -3'
miRNA:   3'- -CCUCUCGUaaa--CGUaCCC-------CUGgCGGG- -5'
30993 3' -55.1 NC_006560.1 + 106231 0.66 0.937195
Target:  5'- cGGGcucGCGUU--CGUGGaGACCGCCCg -3'
miRNA:   3'- cCUCu--CGUAAacGUACCcCUGGCGGG- -5'
30993 3' -55.1 NC_006560.1 + 150370 0.66 0.937195
Target:  5'- gGGGGuGCGUUUGg--GGGGGCgCGUUUg -3'
miRNA:   3'- -CCUCuCGUAAACguaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 146266 0.66 0.937195
Target:  5'- uGGGGAgGUAgc-GCGUGGGGccggacGCCGCg- -3'
miRNA:   3'- -CCUCU-CGUaaaCGUACCCC------UGGCGgg -5'
30993 3' -55.1 NC_006560.1 + 47159 0.66 0.937195
Target:  5'- cGGAggcgccGAGCucgcgagGCGcgagGGGGGCCGCUa -3'
miRNA:   3'- -CCU------CUCGuaaa---CGUa---CCCCUGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 32713 0.66 0.937195
Target:  5'- cGAGGGCGcgcggGCccGGGGuCCGUCg -3'
miRNA:   3'- cCUCUCGUaaa--CGuaCCCCuGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 26255 0.66 0.937195
Target:  5'- cGGAGGGgGgc-GCGUcgcGGGGcucgcGCCGCCg -3'
miRNA:   3'- -CCUCUCgUaaaCGUA---CCCC-----UGGCGGg -5'
30993 3' -55.1 NC_006560.1 + 41 0.66 0.937195
Target:  5'- gGGGGuGCGUUUGg--GGGGGCgCGUUUg -3'
miRNA:   3'- -CCUCuCGUAAACguaCCCCUG-GCGGG- -5'
30993 3' -55.1 NC_006560.1 + 85872 0.66 0.937195
Target:  5'- --cGAGCcccgccgGCAgGGGGugCGCCa -3'
miRNA:   3'- ccuCUCGuaaa---CGUaCCCCugGCGGg -5'
30993 3' -55.1 NC_006560.1 + 26352 0.66 0.937195
Target:  5'- gGGAGGGCGgagacgGCggGGcGGAgacggCGCCCc -3'
miRNA:   3'- -CCUCUCGUaaa---CGuaCC-CCUg----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.