miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 3' -56.4 NC_006560.1 + 60971 0.66 0.902638
Target:  5'- cGCGG-AGGccguggACUGGCuCCCCGAGccgaUGACc -3'
miRNA:   3'- -CGCCaUCUa-----UGGUCG-GGGGCUC----ACUG- -5'
30994 3' -56.4 NC_006560.1 + 105118 0.66 0.902638
Target:  5'- aGCGGgaccGcUACUGGgcCCCCCGGGUcGACg -3'
miRNA:   3'- -CGCCau--CuAUGGUC--GGGGGCUCA-CUG- -5'
30994 3' -56.4 NC_006560.1 + 69575 0.66 0.902638
Target:  5'- gGCGGUucGGcgcggGCCGGCCCagcccgcuCCGGGaGACg -3'
miRNA:   3'- -CGCCA--UCua---UGGUCGGG--------GGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 52600 0.66 0.902638
Target:  5'- gGCGGUGGcgACgGGCgggcugcggauCCCCGAGagcccgccgGGCg -3'
miRNA:   3'- -CGCCAUCuaUGgUCG-----------GGGGCUCa--------CUG- -5'
30994 3' -56.4 NC_006560.1 + 123363 0.66 0.902638
Target:  5'- gGUGGgccacGGGUacaACCAGcCCCCCGAGcuGCu -3'
miRNA:   3'- -CGCCa----UCUA---UGGUC-GGGGGCUCacUG- -5'
30994 3' -56.4 NC_006560.1 + 40086 0.66 0.896234
Target:  5'- uGCGGUGGggGCgGGgCgCCCGGGccgccgGGCg -3'
miRNA:   3'- -CGCCAUCuaUGgUCgG-GGGCUCa-----CUG- -5'
30994 3' -56.4 NC_006560.1 + 72916 0.66 0.889602
Target:  5'- uGCGGgagc-GCCGGCCCCCGGa---- -3'
miRNA:   3'- -CGCCaucuaUGGUCGGGGGCUcacug -5'
30994 3' -56.4 NC_006560.1 + 11355 0.66 0.889602
Target:  5'- gGCGGUAGAUGCgGGCC---GGGUG-Cg -3'
miRNA:   3'- -CGCCAUCUAUGgUCGGgggCUCACuG- -5'
30994 3' -56.4 NC_006560.1 + 32844 0.66 0.882745
Target:  5'- cGCGGgcGGcgGgCAGCCCCCcgggcaGAGggGGCa -3'
miRNA:   3'- -CGCCauCUa-UgGUCGGGGG------CUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 137257 0.66 0.882745
Target:  5'- gGCGGgcGAcGCCgAGUUCCCgGAG-GACg -3'
miRNA:   3'- -CGCCauCUaUGG-UCGGGGG-CUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 56918 0.66 0.882745
Target:  5'- gGCGGUGGAgccCCAGCaCCUgcgCGAGgGAg -3'
miRNA:   3'- -CGCCAUCUau-GGUCG-GGG---GCUCaCUg -5'
30994 3' -56.4 NC_006560.1 + 16279 0.66 0.882745
Target:  5'- cGCGG-AGAcgGCCGaCCCCUGGGgcgcGGCg -3'
miRNA:   3'- -CGCCaUCUa-UGGUcGGGGGCUCa---CUG- -5'
30994 3' -56.4 NC_006560.1 + 47037 0.66 0.879941
Target:  5'- gGCGGcgcgccacgACC-GCCCCCGAGaGACc -3'
miRNA:   3'- -CGCCaucua----UGGuCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 16645 0.66 0.875668
Target:  5'- gGCGGc-GGUugCGcGCCgCCCG-GUGGCg -3'
miRNA:   3'- -CGCCauCUAugGU-CGG-GGGCuCACUG- -5'
30994 3' -56.4 NC_006560.1 + 130153 0.66 0.875668
Target:  5'- cGCGGccug-GCU-GCCCCCGAG-GACc -3'
miRNA:   3'- -CGCCaucuaUGGuCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 3281 0.66 0.875668
Target:  5'- cGCGG-GGGU-CgGGCCCgCCGGGcgGGCg -3'
miRNA:   3'- -CGCCaUCUAuGgUCGGG-GGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 37784 0.66 0.875668
Target:  5'- gGCGGcAGGgccACCAGCUCCgCGAauUGACg -3'
miRNA:   3'- -CGCCaUCUa--UGGUCGGGG-GCUc-ACUG- -5'
30994 3' -56.4 NC_006560.1 + 104858 0.66 0.873502
Target:  5'- cGCGGUguguuuuauaaaagGGGgcgcgcGCCGGCCCCCucGUcGGCa -3'
miRNA:   3'- -CGCCA--------------UCUa-----UGGUCGGGGGcuCA-CUG- -5'
30994 3' -56.4 NC_006560.1 + 135989 0.67 0.868374
Target:  5'- cGCGGUGGcgGCCgggGGCgggaCCGAG-GACg -3'
miRNA:   3'- -CGCCAUCuaUGG---UCGgg--GGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 139240 0.67 0.860869
Target:  5'- cGUGGUcgGGGUccggcgcCCGGaCCCCCGGG-GGCg -3'
miRNA:   3'- -CGCCA--UCUAu------GGUC-GGGGGCUCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.