miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 5' -69.2 NC_006560.1 + 30683 0.66 0.40177
Target:  5'- uCGGggccCCCCGugGccccGGU-GGCCCCGCgGc -3'
miRNA:   3'- -GCCa---GGGGCugC----CCGcCCGGGGCGgC- -5'
30994 5' -69.2 NC_006560.1 + 28486 0.66 0.40177
Target:  5'- aCGGUCCgCCc-CGGGCcGcGCCCCcucGCCGc -3'
miRNA:   3'- -GCCAGG-GGcuGCCCGcC-CGGGG---CGGC- -5'
30994 5' -69.2 NC_006560.1 + 5079 0.66 0.40177
Target:  5'- -cGUCgCCGGCGuGCGGcGCgCCGCCc -3'
miRNA:   3'- gcCAGgGGCUGCcCGCC-CGgGGCGGc -5'
30994 5' -69.2 NC_006560.1 + 39896 0.66 0.40177
Target:  5'- gGGUCUCCGucguuCGGGcCGGGgUgCGCuCGg -3'
miRNA:   3'- gCCAGGGGCu----GCCC-GCCCgGgGCG-GC- -5'
30994 5' -69.2 NC_006560.1 + 27585 0.66 0.40177
Target:  5'- aGG-CCgCCGgcgcGCGGGUGGGCgCUCGCg- -3'
miRNA:   3'- gCCaGG-GGC----UGCCCGCCCG-GGGCGgc -5'
30994 5' -69.2 NC_006560.1 + 36177 0.66 0.40177
Target:  5'- gCGGacCCCCGGucCGGGCucgGGGCUCgggGCCGg -3'
miRNA:   3'- -GCCa-GGGGCU--GCCCG---CCCGGGg--CGGC- -5'
30994 5' -69.2 NC_006560.1 + 52522 0.66 0.397146
Target:  5'- gGaGUCCCUGGCGgaGGCGggggcgucgagcggcGGCCuCUGCCGc -3'
miRNA:   3'- gC-CAGGGGCUGC--CCGC---------------CCGG-GGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 146742 0.66 0.394083
Target:  5'- gGGUCugagCCUGAgucugggccCGGGUcuGGGCCCgCGCCu -3'
miRNA:   3'- gCCAG----GGGCU---------GCCCG--CCCGGG-GCGGc -5'
30994 5' -69.2 NC_006560.1 + 82404 0.66 0.394083
Target:  5'- aGGUCCUCGAaccacaCGGccGCGucccccccGGCCCCGuCCGc -3'
miRNA:   3'- gCCAGGGGCU------GCC--CGC--------CCGGGGC-GGC- -5'
30994 5' -69.2 NC_006560.1 + 122774 0.66 0.394083
Target:  5'- aGGUCCCCGGgGcccggagcuucGGCGGGUCCgGg-- -3'
miRNA:   3'- gCCAGGGGCUgC-----------CCGCCCGGGgCggc -5'
30994 5' -69.2 NC_006560.1 + 145824 0.66 0.394083
Target:  5'- cCGG-CCUCG-CGcGGCGGGCCgggggCGCCc -3'
miRNA:   3'- -GCCaGGGGCuGC-CCGCCCGGg----GCGGc -5'
30994 5' -69.2 NC_006560.1 + 230 0.66 0.394083
Target:  5'- cCGG-CCCgCGGCucGGuGCGGGCCCCa--- -3'
miRNA:   3'- -GCCaGGG-GCUG--CC-CGCCCGGGGcggc -5'
30994 5' -69.2 NC_006560.1 + 31130 0.66 0.394083
Target:  5'- cCGGgggcgCCuCCGgcucGCGGggacccaaGCGGGCCUCGCUGc -3'
miRNA:   3'- -GCCa----GG-GGC----UGCC--------CGCCCGGGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 106998 0.66 0.393319
Target:  5'- -cGUCCCCGAggccuccCGGGCcugcgaGGGC-CCGUCGc -3'
miRNA:   3'- gcCAGGGGCU-------GCCCG------CCCGgGGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 114158 0.66 0.393319
Target:  5'- gCGGUCUuccuCCGcaacgccgucgucGCGGGCaaccggcuGGGCCCgGCCc -3'
miRNA:   3'- -GCCAGG----GGC-------------UGCCCG--------CCCGGGgCGGc -5'
30994 5' -69.2 NC_006560.1 + 26344 0.66 0.392557
Target:  5'- aGGUaCCCgggagggcggagaCGGCgGGGCGGagacggcGCCCCgGCCGg -3'
miRNA:   3'- gCCA-GGG-------------GCUG-CCCGCC-------CGGGG-CGGC- -5'
30994 5' -69.2 NC_006560.1 + 133469 0.66 0.389516
Target:  5'- gCGGgCUCCGgggcguccggcgucuACGGGCGagcgcgagcGGCCgCGCCGg -3'
miRNA:   3'- -GCCaGGGGC---------------UGCCCGC---------CCGGgGCGGC- -5'
30994 5' -69.2 NC_006560.1 + 9145 0.66 0.389516
Target:  5'- aGGUCUucggcgacgCCGAUGGGaacgucgggcgccuCGGGCCCgcgacgggcgucagCGCCGg -3'
miRNA:   3'- gCCAGG---------GGCUGCCC--------------GCCCGGG--------------GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 146510 0.66 0.386491
Target:  5'- gGGgagCUgCGcCGGGCGGGCCggcgCGUCGg -3'
miRNA:   3'- gCCa--GGgGCuGCCCGCCCGGg---GCGGC- -5'
30994 5' -69.2 NC_006560.1 + 117979 0.66 0.386491
Target:  5'- uGGcgCCUgGGCGcGGCGGcGCCCgCGgCGg -3'
miRNA:   3'- gCCa-GGGgCUGC-CCGCC-CGGG-GCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.