miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 145752 0.66 0.423987
Target:  5'- -cGCGCCCCc-GCCCggCCGCCCCC-Cg -3'
miRNA:   3'- uaUGUGGGGccCGGGg-GGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 65651 0.66 0.423987
Target:  5'- -cACACCCa--GCCCcucccgcgCCCACCCCCg- -3'
miRNA:   3'- uaUGUGGGgccCGGG--------GGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 79128 0.66 0.423987
Target:  5'- -gACcCCCCGccGCCCCUC-CCCCCa- -3'
miRNA:   3'- uaUGuGGGGCc-CGGGGGGuGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 23943 0.66 0.423987
Target:  5'- -cGC-CCCCGcGGCgCCCgCGCCCgCCg- -3'
miRNA:   3'- uaUGuGGGGC-CCG-GGGgGUGGG-GGag -5'
30995 3' -66.9 NC_006560.1 + 55776 0.66 0.423987
Target:  5'- gGUGCGCaCCCGcuccggagcGGCCaCCUCgucGCCgCCCUCg -3'
miRNA:   3'- -UAUGUG-GGGC---------CCGG-GGGG---UGG-GGGAG- -5'
30995 3' -66.9 NC_006560.1 + 75010 0.66 0.423987
Target:  5'- cUGgACCCgGcGuGCCCCCuCGCCuUCCUCg -3'
miRNA:   3'- uAUgUGGGgC-C-CGGGGG-GUGG-GGGAG- -5'
30995 3' -66.9 NC_006560.1 + 102595 0.66 0.423987
Target:  5'- -cGCGCCUCGagaacGGCCgCCCGCUCCUcCg -3'
miRNA:   3'- uaUGUGGGGC-----CCGGgGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 105988 0.66 0.423987
Target:  5'- cGUGC-UCCCGGGCCCgCCGCCg---- -3'
miRNA:   3'- -UAUGuGGGGCCCGGGgGGUGGgggag -5'
30995 3' -66.9 NC_006560.1 + 119570 0.66 0.423987
Target:  5'- -cGCGCCgCCGGacagcGCCcggCCCCGCCCUgCUCc -3'
miRNA:   3'- uaUGUGG-GGCC-----CGG---GGGGUGGGG-GAG- -5'
30995 3' -66.9 NC_006560.1 + 131348 0.66 0.423987
Target:  5'- ---aGCCCCGcGCcgaCCCCCgggACCCCCUg -3'
miRNA:   3'- uaugUGGGGCcCG---GGGGG---UGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 141399 0.66 0.423987
Target:  5'- --cCAUCCCccuCCCCCCuccuCCCCCUCc -3'
miRNA:   3'- uauGUGGGGcccGGGGGGu---GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 68242 0.66 0.423155
Target:  5'- cUGCGCCCuacacggggcgcaCGGGCUCCcggagaCCGCgCUCCUCg -3'
miRNA:   3'- uAUGUGGG-------------GCCCGGGG------GGUG-GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 30412 0.66 0.415719
Target:  5'- -gGCGCCCgccaGaGCCCCCCGCCCggCCcCg -3'
miRNA:   3'- uaUGUGGGg---CcCGGGGGGUGGG--GGaG- -5'
30995 3' -66.9 NC_006560.1 + 90748 0.66 0.415719
Target:  5'- ---gGCCCCGcGGa-CCCCAaggaCCCCUCc -3'
miRNA:   3'- uaugUGGGGC-CCggGGGGUg---GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 1101 0.66 0.415719
Target:  5'- -gGCuCCCCGGcggcgcgaGCCCCgCGacgcgcCCCCCUCc -3'
miRNA:   3'- uaUGuGGGGCC--------CGGGGgGU------GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 48377 0.66 0.415719
Target:  5'- -gACGCCCaCGcGCCCgaCCgCGCCCCCa- -3'
miRNA:   3'- uaUGUGGG-GCcCGGG--GG-GUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 70327 0.66 0.415719
Target:  5'- uGUACGCCgUGGucggggagGCCCCCgACCgCCUg -3'
miRNA:   3'- -UAUGUGGgGCC--------CGGGGGgUGGgGGAg -5'
30995 3' -66.9 NC_006560.1 + 27879 0.66 0.415719
Target:  5'- -gGgGCCgCGaGGCCgCCuCCGCCCCCc- -3'
miRNA:   3'- uaUgUGGgGC-CCGG-GG-GGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 120691 0.66 0.415719
Target:  5'- --cCACCCCGGGCCCgaauaaagacguUCgcgagcaGCCCCgUCg -3'
miRNA:   3'- uauGUGGGGCCCGGG------------GGg------UGGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 28321 0.66 0.415719
Target:  5'- uUAUACCCCGcucggggggcGGCgCCgCCCGgCUCCUCc -3'
miRNA:   3'- uAUGUGGGGC----------CCG-GG-GGGUgGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.