miRNA display CGI


Results 21 - 40 of 347 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 145205 0.71 0.202723
Target:  5'- --cUACCCCugGGGCCCCCC-CUUCCUg -3'
miRNA:   3'- uauGUGGGG--CCCGGGGGGuGGGGGAg -5'
30995 3' -66.9 NC_006560.1 + 145149 0.68 0.310998
Target:  5'- --cCGCCCCccugggggGGGCCgcacuCCCCGCCuCCCUg -3'
miRNA:   3'- uauGUGGGG--------CCCGG-----GGGGUGG-GGGAg -5'
30995 3' -66.9 NC_006560.1 + 145098 0.73 0.135141
Target:  5'- ---aGCCCCugGGGCagCCCCCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGG--CCCG--GGGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 145003 0.74 0.122569
Target:  5'- -cGCGCCCuCGGGCggagCCCCCGgCCCCg- -3'
miRNA:   3'- uaUGUGGG-GCCCG----GGGGGUgGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144963 0.77 0.07088
Target:  5'- -gGCGCgCCGGGCCCCgCC-CCCCCg- -3'
miRNA:   3'- uaUGUGgGGCCCGGGG-GGuGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144911 0.86 0.015572
Target:  5'- -cGCGCCCCcGGCCCCCCccuCCCCCUCg -3'
miRNA:   3'- uaUGUGGGGcCCGGGGGGu--GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144831 0.76 0.078389
Target:  5'- -gGCcuCCCCGGGCCCU--GCCCCCUCu -3'
miRNA:   3'- uaUGu-GGGGCCCGGGGggUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144762 0.7 0.232321
Target:  5'- --uCGCCgCCGGcggcgacGgCCCCCugCCCCUCg -3'
miRNA:   3'- uauGUGG-GGCC-------CgGGGGGugGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144552 0.69 0.278785
Target:  5'- ----cCCCgCGGGCCCCU--UCCCCUCg -3'
miRNA:   3'- uauguGGG-GCCCGGGGGguGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144505 0.68 0.304336
Target:  5'- ---uGCCCCGcGGCCgccuuCCCCgcggGCCCCUUCc -3'
miRNA:   3'- uaugUGGGGC-CCGG-----GGGG----UGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144436 0.75 0.098157
Target:  5'- --cCGCCCa-GGCCCCCgACCCCCUUc -3'
miRNA:   3'- uauGUGGGgcCCGGGGGgUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144405 0.73 0.148889
Target:  5'- -gGCcCCCCGGGCCUCCgcgacccaACCCCCg- -3'
miRNA:   3'- uaUGuGGGGCCCGGGGGg-------UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144310 0.7 0.212371
Target:  5'- -cGCGCCCCccuCUCCCCGCCCCuCUCc -3'
miRNA:   3'- uaUGUGGGGcccGGGGGGUGGGG-GAG- -5'
30995 3' -66.9 NC_006560.1 + 144251 0.76 0.078192
Target:  5'- --cCugCCCGGGCCCgCCCGcgugcgcggggacCCCCCUCc -3'
miRNA:   3'- uauGugGGGCCCGGG-GGGU-------------GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144222 0.75 0.10315
Target:  5'- --cCugCCgGcGGCCCCCCGCCgCCUCu -3'
miRNA:   3'- uauGugGGgC-CCGGGGGGUGGgGGAG- -5'
30995 3' -66.9 NC_006560.1 + 144179 0.72 0.156231
Target:  5'- -gAUACCCCGGcGUgaCCCCgACCCCCg- -3'
miRNA:   3'- uaUGUGGGGCC-CG--GGGGgUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 144069 0.83 0.024192
Target:  5'- -cGC-CCCCGGcGCCCCCCGCCCCCc- -3'
miRNA:   3'- uaUGuGGGGCC-CGGGGGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 143999 0.69 0.254971
Target:  5'- ----uCCCCc-GCCuCCCCGCCCCCUCc -3'
miRNA:   3'- uauguGGGGccCGG-GGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 143926 0.66 0.391521
Target:  5'- -cGCGCCCCacGGCCCcgcgaggcgaCCCGCgagcgugucuuCCCCUCu -3'
miRNA:   3'- uaUGUGGGGc-CCGGG----------GGGUG-----------GGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 143869 0.69 0.278168
Target:  5'- --cCACgCCCGcGGCcgacccccgccgaCCCCCGCCCCC-Cg -3'
miRNA:   3'- uauGUG-GGGC-CCG-------------GGGGGUGGGGGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.