miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 5' -51.6 NC_006560.1 + 105915 0.66 0.990911
Target:  5'- cGGCGGAGGUGGUGGu---------- -3'
miRNA:   3'- cCCGCUUCCACCGCCcuuucaauugu -5'
30995 5' -51.6 NC_006560.1 + 146960 0.66 0.990911
Target:  5'- aGGGcCGggGGccgggccugGGCGGGugGGcggGGCAu -3'
miRNA:   3'- -CCC-GCuuCCa--------CCGCCCuuUCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 28041 0.66 0.990911
Target:  5'- gGGGUGAGucGGUGGUcuugGGGucGGUgGGCGg -3'
miRNA:   3'- -CCCGCUU--CCACCG----CCCuuUCAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 39317 0.66 0.990911
Target:  5'- cGGGCGggGcGguggGGCGGGGc-------- -3'
miRNA:   3'- -CCCGCuuC-Ca---CCGCCCUuucaauugu -5'
30995 5' -51.6 NC_006560.1 + 58144 0.66 0.990911
Target:  5'- -cGCGGAGGaugGGCGGGucgggGAAGUaucgGGCGu -3'
miRNA:   3'- ccCGCUUCCa--CCGCCC-----UUUCAa---UUGU- -5'
30995 5' -51.6 NC_006560.1 + 3323 0.66 0.990911
Target:  5'- cGGGcCGggGGcgcgGGCGGGcgGcGUcGGCGu -3'
miRNA:   3'- -CCC-GCuuCCa---CCGCCCuuU-CAaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 99876 0.66 0.989621
Target:  5'- gGGcGCGggGGUcguGGCGGcGgcGGgcGGCGc -3'
miRNA:   3'- -CC-CGCuuCCA---CCGCC-CuuUCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 32865 0.66 0.989621
Target:  5'- cGGGCaGAGGGggcagGGCccGGGGAGGcc-GCGg -3'
miRNA:   3'- -CCCG-CUUCCa----CCG--CCCUUUCaauUGU- -5'
30995 5' -51.6 NC_006560.1 + 36440 0.66 0.989621
Target:  5'- gGGGaUGggGGgaugGGgGGGAGGGggGAn- -3'
miRNA:   3'- -CCC-GCuuCCa---CCgCCCUUUCaaUUgu -5'
30995 5' -51.6 NC_006560.1 + 9076 0.66 0.989621
Target:  5'- aGGGgGAGGGgcGGCGGGGcgacGGcggAGCGc -3'
miRNA:   3'- -CCCgCUUCCa-CCGCCCUu---UCaa-UUGU- -5'
30995 5' -51.6 NC_006560.1 + 50399 0.66 0.988193
Target:  5'- aGGGCGAcuacccGGGcgcGGCGGGGgcgGAGUg---- -3'
miRNA:   3'- -CCCGCU------UCCa--CCGCCCU---UUCAauugu -5'
30995 5' -51.6 NC_006560.1 + 147988 0.66 0.988193
Target:  5'- cGGCGucGGaGGCGGGgcGGUc-GCGg -3'
miRNA:   3'- cCCGCuuCCaCCGCCCuuUCAauUGU- -5'
30995 5' -51.6 NC_006560.1 + 126052 0.66 0.986616
Target:  5'- uGGGCGggGGcgaugUGGCauuuucccGGGAGGGggGu-- -3'
miRNA:   3'- -CCCGCuuCC-----ACCG--------CCCUUUCaaUugu -5'
30995 5' -51.6 NC_006560.1 + 49679 0.66 0.986616
Target:  5'- cGGGgGAggGGGUGGUGGGu--GUg---- -3'
miRNA:   3'- -CCCgCU--UCCACCGCCCuuuCAauugu -5'
30995 5' -51.6 NC_006560.1 + 14726 0.66 0.986616
Target:  5'- cGGGCG-AGGcGGUGaGGAAcGgaAACAg -3'
miRNA:   3'- -CCCGCuUCCaCCGC-CCUUuCaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 14374 0.66 0.984883
Target:  5'- gGGGCGAGGcGaGGCGGGGc----GACGa -3'
miRNA:   3'- -CCCGCUUC-CaCCGCCCUuucaaUUGU- -5'
30995 5' -51.6 NC_006560.1 + 20608 0.66 0.984883
Target:  5'- uGGCGcGGGUGGUGGGGc-------- -3'
miRNA:   3'- cCCGCuUCCACCGCCCUuucaauugu -5'
30995 5' -51.6 NC_006560.1 + 51891 0.66 0.984883
Target:  5'- cGGGCG-GGGUGGCGGauauccGGUc-GCAg -3'
miRNA:   3'- -CCCGCuUCCACCGCCcuu---UCAauUGU- -5'
30995 5' -51.6 NC_006560.1 + 131670 0.66 0.984883
Target:  5'- cGGCGAGGcccUGGCGGGc-GGggGGCu -3'
miRNA:   3'- cCCGCUUCc--ACCGCCCuuUCaaUUGu -5'
30995 5' -51.6 NC_006560.1 + 82360 0.67 0.982984
Target:  5'- uGGCGuccGUGGUGGGAAAGa----- -3'
miRNA:   3'- cCCGCuucCACCGCCCUUUCaauugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.