miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 3' -57.5 NC_006560.1 + 147359 0.66 0.877168
Target:  5'- -gACGCCGgucagUCGGgGuGGggGGUgCGGGg -3'
miRNA:   3'- agUGCGGC-----AGCCgC-CCuuCUAgGUCU- -5'
30996 3' -57.5 NC_006560.1 + 97052 0.66 0.877168
Target:  5'- gCACGCUGaccaagUGGCGGGAGGuggaCgAGAu -3'
miRNA:   3'- aGUGCGGCa-----GCCGCCCUUCua--GgUCU- -5'
30996 3' -57.5 NC_006560.1 + 15742 0.66 0.877168
Target:  5'- gCACGCCGggGGCgcgcgcguccgGGGgcGAcUCCGGGc -3'
miRNA:   3'- aGUGCGGCagCCG-----------CCCuuCU-AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 94822 0.66 0.872902
Target:  5'- aCGCGCuccuCGUCGGgGGGcaggcgaccucgcccGAGGaCCAGAu -3'
miRNA:   3'- aGUGCG----GCAGCCgCCC---------------UUCUaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 32841 0.66 0.870016
Target:  5'- cCACGCgGgCGGCGGGcAGccccCCGGGc -3'
miRNA:   3'- aGUGCGgCaGCCGCCCuUCua--GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 90343 0.66 0.870016
Target:  5'- -gACGCCGUCGcGCGGGcGGccgcCCAc- -3'
miRNA:   3'- agUGCGGCAGC-CGCCCuUCua--GGUcu -5'
30996 3' -57.5 NC_006560.1 + 129445 0.66 0.870016
Target:  5'- -uGCGCUGggacUCGGCGGcGggGggCuCGGAg -3'
miRNA:   3'- agUGCGGC----AGCCGCC-CuuCuaG-GUCU- -5'
30996 3' -57.5 NC_006560.1 + 46026 0.66 0.86929
Target:  5'- cCGCGCagaagucCGUCGGCaucgccacccGGAGAUCCAGGg -3'
miRNA:   3'- aGUGCG-------GCAGCCGcc--------CUUCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 20976 0.66 0.86929
Target:  5'- -gGCGCCGcCGGCuuuaugucggcggGGGAAGggCgGGGc -3'
miRNA:   3'- agUGCGGCaGCCG-------------CCCUUCuaGgUCU- -5'
30996 3' -57.5 NC_006560.1 + 11929 0.66 0.862658
Target:  5'- gCGgGCCcgcaggagggGcCGGCGGGccAGGUCCAGGg -3'
miRNA:   3'- aGUgCGG----------CaGCCGCCCu-UCUAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 72232 0.66 0.862658
Target:  5'- aCGcCGCCgGUCGGCGaGGggGG--CGGAg -3'
miRNA:   3'- aGU-GCGG-CAGCCGC-CCuuCUagGUCU- -5'
30996 3' -57.5 NC_006560.1 + 11244 0.66 0.862658
Target:  5'- -gGCGCCGcUUGGCccgacGGGgcGAcUCCGGGg -3'
miRNA:   3'- agUGCGGC-AGCCG-----CCCuuCU-AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 146015 0.66 0.862658
Target:  5'- -gAgGCCGUgGGCGGGGucucCCGGGu -3'
miRNA:   3'- agUgCGGCAgCCGCCCUucuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 142091 0.66 0.862658
Target:  5'- -gGgGCCG-CGGCGcGGAGGAUucCCGGc -3'
miRNA:   3'- agUgCGGCaGCCGC-CCUUCUA--GGUCu -5'
30996 3' -57.5 NC_006560.1 + 100889 0.66 0.855099
Target:  5'- cCGCGCCaacugagccCGGUGGGAAGGccgaCCGGGu -3'
miRNA:   3'- aGUGCGGca-------GCCGCCCUUCUa---GGUCU- -5'
30996 3' -57.5 NC_006560.1 + 106199 0.66 0.855099
Target:  5'- uUCugGCgGcUGGCGGcGAGGAucgccacgUCCGGGc -3'
miRNA:   3'- -AGugCGgCaGCCGCC-CUUCU--------AGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 1632 0.66 0.855099
Target:  5'- uUCGCGCCuGUCuguGGCGGGG----CCGGGg -3'
miRNA:   3'- -AGUGCGG-CAG---CCGCCCUucuaGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 66509 0.66 0.855099
Target:  5'- gCGCGCCccgguaGUUGGCGGuGAcGugcGUCCGGAc -3'
miRNA:   3'- aGUGCGG------CAGCCGCC-CUuC---UAGGUCU- -5'
30996 3' -57.5 NC_006560.1 + 9286 0.66 0.855099
Target:  5'- gCGCGCC-UCGG-GGGAccacGGGUCCGc- -3'
miRNA:   3'- aGUGCGGcAGCCgCCCU----UCUAGGUcu -5'
30996 3' -57.5 NC_006560.1 + 95037 0.66 0.847344
Target:  5'- -gGCGCCG-CGGcCGGGGAG--CCGGc -3'
miRNA:   3'- agUGCGGCaGCC-GCCCUUCuaGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.