miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 70704 0.66 0.993556
Target:  5'- ------cGCG-CCGCCACGGgcccccggCGCGu -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCaa------GCGC- -5'
30996 5' -51.4 NC_006560.1 + 28482 0.66 0.993556
Target:  5'- -cUCGAcg-GUCCGCCcCGGgcCGCGc -3'
miRNA:   3'- gaAGUUuugCAGGCGGuGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 42408 0.66 0.99268
Target:  5'- --gCAcGACGUucgucaccgccaggCCGCCguugaagaucucguuGCGGUUCGCGu -3'
miRNA:   3'- gaaGUuUUGCA--------------GGCGG---------------UGCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 15435 0.66 0.992577
Target:  5'- --gCGGcGCGcCCGgCGCGcGUUCGCGc -3'
miRNA:   3'- gaaGUUuUGCaGGCgGUGC-CAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 41286 0.66 0.992577
Target:  5'- ---aGGAACGUCCGg-GCGGUcgCGCGg -3'
miRNA:   3'- gaagUUUUGCAGGCggUGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 127171 0.66 0.992577
Target:  5'- -cUCGGcGGCGUCCuGCCggcgGCGGUagCGCGc -3'
miRNA:   3'- gaAGUU-UUGCAGG-CGG----UGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 87840 0.66 0.992261
Target:  5'- -aUCucGACGUCgCucgaggugacgaagGCCGCGGUggggCGCGg -3'
miRNA:   3'- gaAGuuUUGCAG-G--------------CGGUGCCAa---GCGC- -5'
30996 5' -51.4 NC_006560.1 + 82237 0.66 0.991484
Target:  5'- gUUCG--GCGUgCGCgCACGGcggcggUCGCGu -3'
miRNA:   3'- gAAGUuuUGCAgGCG-GUGCCa-----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 27692 0.66 0.991484
Target:  5'- -gUCGGggUGcgCCGcCCGCGGUcccgagCGCGg -3'
miRNA:   3'- gaAGUUuuGCa-GGC-GGUGCCAa-----GCGC- -5'
30996 5' -51.4 NC_006560.1 + 142959 0.66 0.991484
Target:  5'- --gCGAGGCGacgcgcgggCCGCCGCGGcgaGCGa -3'
miRNA:   3'- gaaGUUUUGCa--------GGCGGUGCCaagCGC- -5'
30996 5' -51.4 NC_006560.1 + 66914 0.66 0.990266
Target:  5'- -cUCGGcgccgcCGUCCGCCGCGGccccCGCc -3'
miRNA:   3'- gaAGUUuu----GCAGGCGGUGCCaa--GCGc -5'
30996 5' -51.4 NC_006560.1 + 70820 0.66 0.990266
Target:  5'- --cCAGcGCG-CCGCgGCGGUccgggagguccUCGCGg -3'
miRNA:   3'- gaaGUUuUGCaGGCGgUGCCA-----------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 81871 0.66 0.990266
Target:  5'- ---gGGGACGUCCGCC-CaGU-CGCGc -3'
miRNA:   3'- gaagUUUUGCAGGCGGuGcCAaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 127280 0.66 0.988917
Target:  5'- -cUCGGGGCGUCCaGgUGCGGgggUGCGg -3'
miRNA:   3'- gaAGUUUUGCAGG-CgGUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 107990 0.66 0.988917
Target:  5'- --cCGGGACGUCgGCCG-GGUcgUCGCc -3'
miRNA:   3'- gaaGUUUUGCAGgCGGUgCCA--AGCGc -5'
30996 5' -51.4 NC_006560.1 + 18606 0.66 0.988917
Target:  5'- ---aGGGACGcCCGCguCGGcgCGCGg -3'
miRNA:   3'- gaagUUUUGCaGGCGguGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 70568 0.66 0.988917
Target:  5'- ------cGCGUUCGUCACGGU-CGCc -3'
miRNA:   3'- gaaguuuUGCAGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 39614 0.67 0.987426
Target:  5'- --gCGGAGCG-CCGCgGCGGgcgUCgGCGu -3'
miRNA:   3'- gaaGUUUUGCaGGCGgUGCCa--AG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 144331 0.67 0.985785
Target:  5'- -cUCuccGCGgccCCGCCGCGGg-CGCGa -3'
miRNA:   3'- gaAGuuuUGCa--GGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 106409 0.67 0.985785
Target:  5'- -cUCGAGGCGcgCCucgggcggcugGCCGCGGaggcggUCGCGg -3'
miRNA:   3'- gaAGUUUUGCa-GG-----------CGGUGCCa-----AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.