miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 146832 0.66 0.761617
Target:  5'- gGGUGUgggcgugcuGCGGCGGCGCggggcggggcgGCgCCCGg -3'
miRNA:   3'- aCCACAacu------CGUCGUCGUG-----------CGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 76502 0.66 0.761617
Target:  5'- cUGGcug-GAGCAcgcGCGGCGCGUCUUCGg -3'
miRNA:   3'- -ACCacaaCUCGU---CGUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 9264 0.66 0.761617
Target:  5'- aGGUGacGAggucGCGGCcccGGCGCGCCUCgGg -3'
miRNA:   3'- aCCACaaCU----CGUCG---UCGUGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 35390 0.66 0.761617
Target:  5'- aGGgGggGAGCuccAGCGGCcggcgccggccGCGCCCgCCGc -3'
miRNA:   3'- aCCaCaaCUCG---UCGUCG-----------UGCGGG-GGC- -5'
30997 3' -59.5 NC_006560.1 + 86398 0.66 0.761617
Target:  5'- gUGGaGgcaGGGCAGCAggccgugcuGCACGCCCgUGa -3'
miRNA:   3'- -ACCaCaa-CUCGUCGU---------CGUGCGGGgGC- -5'
30997 3' -59.5 NC_006560.1 + 149094 0.66 0.761617
Target:  5'- cGGgGgcGGGCGcCGGgGCGUCCCCGu -3'
miRNA:   3'- aCCaCaaCUCGUcGUCgUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 119509 0.66 0.758797
Target:  5'- aGGUGccuccGGGCcGCggggccgcgcgcuaAGCGCGCCCCgCGg -3'
miRNA:   3'- aCCACaa---CUCGuCG--------------UCGUGCGGGG-GC- -5'
30997 3' -59.5 NC_006560.1 + 54485 0.66 0.752179
Target:  5'- gGGUGaUG-GCAgaugcGCAGCGCcggGCCCUCGc -3'
miRNA:   3'- aCCACaACuCGU-----CGUCGUG---CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 30469 0.66 0.752179
Target:  5'- aGGaGgagGAGCAGgAGCgggagGCGCCCCgGc -3'
miRNA:   3'- aCCaCaa-CUCGUCgUCG-----UGCGGGGgC- -5'
30997 3' -59.5 NC_006560.1 + 38661 0.66 0.752179
Target:  5'- ---cGUccAGCGGCAGCACGCCgCgGg -3'
miRNA:   3'- accaCAacUCGUCGUCGUGCGGgGgC- -5'
30997 3' -59.5 NC_006560.1 + 5673 0.66 0.752179
Target:  5'- gGGgcgcggGGGCGGcCGGCgGCGCCgCCCGu -3'
miRNA:   3'- aCCacaa--CUCGUC-GUCG-UGCGG-GGGC- -5'
30997 3' -59.5 NC_006560.1 + 22351 0.66 0.752179
Target:  5'- cGGcgGggGAGgaggacgaCGGCGGCGacgggcacccCGCCCCCGg -3'
miRNA:   3'- aCCa-CaaCUC--------GUCGUCGU----------GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 94505 0.66 0.752179
Target:  5'- cGGgcgcGAGCcGCgAGCGCGgCCCCGc -3'
miRNA:   3'- aCCacaaCUCGuCG-UCGUGCgGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 120632 0.66 0.750278
Target:  5'- cGGUGgcgaggGAGUAGCGaccGCcugucuccgaccCGCCCCCGc -3'
miRNA:   3'- aCCACaa----CUCGUCGU---CGu-----------GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 15956 0.66 0.742637
Target:  5'- -cGUGUggGAGUacGGCcGCACGUgCCCGg -3'
miRNA:   3'- acCACAa-CUCG--UCGuCGUGCGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 115093 0.66 0.742637
Target:  5'- gUGGUGUuucUGccgacgauccGGCGGCAGCugGCgCUggCCGa -3'
miRNA:   3'- -ACCACA---AC----------UCGUCGUCGugCG-GG--GGC- -5'
30997 3' -59.5 NC_006560.1 + 131164 0.66 0.733001
Target:  5'- cGGcucUGGGCGGCGGC-CGCCgcgggggcgCCCGg -3'
miRNA:   3'- aCCacaACUCGUCGUCGuGCGG---------GGGC- -5'
30997 3' -59.5 NC_006560.1 + 78391 0.66 0.733001
Target:  5'- cUGGUGcUG-GCGGC--CACGCUCCUGg -3'
miRNA:   3'- -ACCACaACuCGUCGucGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 116417 0.66 0.733001
Target:  5'- aGGaagaagGGGUagAGCAcCGCGCCCCCGg -3'
miRNA:   3'- aCCacaa--CUCG--UCGUcGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 95928 0.66 0.733001
Target:  5'- cGGUccu--GCAGCAcCugGCCCCCa -3'
miRNA:   3'- aCCAcaacuCGUCGUcGugCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.