miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 146285 0.66 0.824428
Target:  5'- gCCGGACGCCgCGggGGCgCGgUCggCGUc -3'
miRNA:   3'- aGGUCUGUGG-GCa-CCG-GCgAGuaGCA- -5'
30997 5' -58.6 NC_006560.1 + 95860 0.66 0.824428
Target:  5'- gCCGGACggcggcaucgGCCCGcGGUCGgUCGUgGUg -3'
miRNA:   3'- aGGUCUG----------UGGGCaCCGGCgAGUAgCA- -5'
30997 5' -58.6 NC_006560.1 + 11294 0.66 0.824428
Target:  5'- cCCAGGCGCgCCaG-GGCCGcCUCGUUc- -3'
miRNA:   3'- aGGUCUGUG-GG-CaCCGGC-GAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 127785 0.66 0.824428
Target:  5'- cCCGGACACgaGUG--UGCUCGUCGUc -3'
miRNA:   3'- aGGUCUGUGggCACcgGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 107892 0.66 0.815995
Target:  5'- -gCGGGCgACCCGggUGGCCGCggccaAUCGc -3'
miRNA:   3'- agGUCUG-UGGGC--ACCGGCGag---UAGCa -5'
30997 5' -58.6 NC_006560.1 + 111537 0.66 0.807399
Target:  5'- -gCGGGCgGCCCGUGGacggagUGCUCGUCa- -3'
miRNA:   3'- agGUCUG-UGGGCACCg-----GCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 53625 0.66 0.807399
Target:  5'- cUCCcucGGCGCCCuGcGGCgGCUCGUUGc -3'
miRNA:   3'- -AGGu--CUGUGGG-CaCCGgCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 58742 0.66 0.807399
Target:  5'- gCCGGACgccgagaagcGCCCGUugGGCCccaGCUCcagaGUCGUg -3'
miRNA:   3'- aGGUCUG----------UGGGCA--CCGG---CGAG----UAGCA- -5'
30997 5' -58.6 NC_006560.1 + 35782 0.66 0.807399
Target:  5'- gCCuGACGCCCGggaggcGGCUGCg-GUCGc -3'
miRNA:   3'- aGGuCUGUGGGCa-----CCGGCGagUAGCa -5'
30997 5' -58.6 NC_006560.1 + 71849 0.66 0.807399
Target:  5'- gCgGGGCcuggGCCCGgcGGCCGCU-GUCGUa -3'
miRNA:   3'- aGgUCUG----UGGGCa-CCGGCGAgUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 80052 0.66 0.798651
Target:  5'- cCCGGACACCCGggcGGUCGgaCGccccccUCGc -3'
miRNA:   3'- aGGUCUGUGGGCa--CCGGCgaGU------AGCa -5'
30997 5' -58.6 NC_006560.1 + 78110 0.66 0.798651
Target:  5'- cCCGGGCGCUgGUGGCgG-UCAgCGUg -3'
miRNA:   3'- aGGUCUGUGGgCACCGgCgAGUaGCA- -5'
30997 5' -58.6 NC_006560.1 + 76967 0.66 0.780726
Target:  5'- gCC-GACGCCCuGggccGGCUGCUgGUCGa -3'
miRNA:   3'- aGGuCUGUGGG-Ca---CCGGCGAgUAGCa -5'
30997 5' -58.6 NC_006560.1 + 4999 0.66 0.779815
Target:  5'- gCCGGGggcggggUGCCCGUcGCCGC-CGUCGUc -3'
miRNA:   3'- aGGUCU-------GUGGGCAcCGGCGaGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 42127 0.66 0.777991
Target:  5'- cCCGGACGCcagcgccucggcguCCG-GGUCGCcgUCGUCGUc -3'
miRNA:   3'- aGGUCUGUG--------------GGCaCCGGCG--AGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 11503 0.67 0.771566
Target:  5'- cUCGGGCGCCgGggaGG-CGCUCGUCGc -3'
miRNA:   3'- aGGUCUGUGGgCa--CCgGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 83022 0.67 0.771566
Target:  5'- cCCAGuGCGCCgccggcaucuuCGUGGCCGCguUCGaguUCGUg -3'
miRNA:   3'- aGGUC-UGUGG-----------GCACCGGCG--AGU---AGCA- -5'
30997 5' -58.6 NC_006560.1 + 109034 0.67 0.762286
Target:  5'- gUCCAGgaACACCuCGUgcucgcccaccGGCCGCaCGUCGc -3'
miRNA:   3'- -AGGUC--UGUGG-GCA-----------CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 89753 0.67 0.762286
Target:  5'- uUCgAGGCcaaCGUGGCCGUcgUCGUCGg -3'
miRNA:   3'- -AGgUCUGuggGCACCGGCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 115166 0.67 0.752895
Target:  5'- gCCAGGCcCCCGacacgcuggGGCUGCUCcuggCGUa -3'
miRNA:   3'- aGGUCUGuGGGCa--------CCGGCGAGua--GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.