miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30998 5' -58 NC_006560.1 + 35145 0.66 0.836029
Target:  5'- -gGCCGGCGGcccGCGuccgacgcgCCCGGCCGc- -3'
miRNA:   3'- gaCGGCUGCUu--CGCua-------GGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 57348 0.66 0.836029
Target:  5'- -gGCCGcgGCGAAGCGGcCUCGGgCGGa -3'
miRNA:   3'- gaCGGC--UGCUUCGCUaGGGUCgGCUa -5'
30998 5' -58 NC_006560.1 + 11904 0.66 0.827747
Target:  5'- -gGCCGACGAcGGCG-UCCgcgaAGCCGc- -3'
miRNA:   3'- gaCGGCUGCU-UCGCuAGGg---UCGGCua -5'
30998 5' -58 NC_006560.1 + 29068 0.66 0.827747
Target:  5'- -gGCCGGCGggGCccgCCC-GUCGGg -3'
miRNA:   3'- gaCGGCUGCuuCGcuaGGGuCGGCUa -5'
30998 5' -58 NC_006560.1 + 74201 0.66 0.827747
Target:  5'- gUG-CGGCGGAGCucGggCCUGGCCGAg -3'
miRNA:   3'- gACgGCUGCUUCG--CuaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 135124 0.66 0.827747
Target:  5'- -aGCCGGCG-GGCGG-CCacguGCCGGUg -3'
miRNA:   3'- gaCGGCUGCuUCGCUaGGgu--CGGCUA- -5'
30998 5' -58 NC_006560.1 + 147991 0.66 0.827747
Target:  5'- -cGUCGgagGCGggGCGGUCgCGGCCc-- -3'
miRNA:   3'- gaCGGC---UGCuuCGCUAGgGUCGGcua -5'
30998 5' -58 NC_006560.1 + 148427 0.66 0.827747
Target:  5'- -gGCCGGCGAGGaggaGAgagaaCCCgggcgGGCCGAc -3'
miRNA:   3'- gaCGGCUGCUUCg---CUa----GGG-----UCGGCUa -5'
30998 5' -58 NC_006560.1 + 14869 0.66 0.827747
Target:  5'- -cGCCGGgGggGCGGggagaggucguUCCCGGgcCCGGg -3'
miRNA:   3'- gaCGGCUgCuuCGCU-----------AGGGUC--GGCUa -5'
30998 5' -58 NC_006560.1 + 23596 0.66 0.827747
Target:  5'- -gGCCGcgcGCGccGCGGUCCC-GCCGc- -3'
miRNA:   3'- gaCGGC---UGCuuCGCUAGGGuCGGCua -5'
30998 5' -58 NC_006560.1 + 74311 0.66 0.827747
Target:  5'- -gGCCGGCGggGaCGAcgCCgCcGCCGGc -3'
miRNA:   3'- gaCGGCUGCuuC-GCUa-GG-GuCGGCUa -5'
30998 5' -58 NC_006560.1 + 131181 0.66 0.827747
Target:  5'- -cGCCG-CGggG-GcgCCCGGCCGc- -3'
miRNA:   3'- gaCGGCuGCuuCgCuaGGGUCGGCua -5'
30998 5' -58 NC_006560.1 + 72088 0.66 0.819291
Target:  5'- -gGCCc-CGAgccGGCGAcCCCGGCCGGc -3'
miRNA:   3'- gaCGGcuGCU---UCGCUaGGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 74581 0.66 0.819291
Target:  5'- gCUGCgGACGGccccGGCcGUCCUGGCCa-- -3'
miRNA:   3'- -GACGgCUGCU----UCGcUAGGGUCGGcua -5'
30998 5' -58 NC_006560.1 + 93781 0.66 0.819291
Target:  5'- cCUG-CGGCGcuGCGAUCCCAGgaUCGGc -3'
miRNA:   3'- -GACgGCUGCuuCGCUAGGGUC--GGCUa -5'
30998 5' -58 NC_006560.1 + 130615 0.66 0.819291
Target:  5'- -gGCCGcGCGGcuGGCGugggCCCGGCUGGc -3'
miRNA:   3'- gaCGGC-UGCU--UCGCua--GGGUCGGCUa -5'
30998 5' -58 NC_006560.1 + 133200 0.66 0.819291
Target:  5'- -gGCCGcCGuccaGAGCGAaCCgCAGCCGGc -3'
miRNA:   3'- gaCGGCuGC----UUCGCUaGG-GUCGGCUa -5'
30998 5' -58 NC_006560.1 + 140874 0.66 0.819291
Target:  5'- aUGCCGuCGAuGCGcgCgUAGUCGAUg -3'
miRNA:   3'- gACGGCuGCUuCGCuaGgGUCGGCUA- -5'
30998 5' -58 NC_006560.1 + 142977 0.66 0.819291
Target:  5'- -cGCCG-CGGcgAGCGAccCCCGGcCCGAg -3'
miRNA:   3'- gaCGGCuGCU--UCGCUa-GGGUC-GGCUa -5'
30998 5' -58 NC_006560.1 + 30035 0.66 0.819291
Target:  5'- -gGCCGAgGAGGCGGUgCgC-GCCGGc -3'
miRNA:   3'- gaCGGCUgCUUCGCUAgG-GuCGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.