miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 30041 0.66 0.999377
Target:  5'- gGAGGCGguGCGcgccggcaccgccguGGACuucaucUGGACGCa -3'
miRNA:   3'- gCUCUGCguCGC---------------UCUGcuu---AUUUGCG- -5'
30999 5' -49 NC_006560.1 + 20548 0.66 0.999377
Target:  5'- gCGAGG-GCGGggggcugggguucgcCGAGGCGGAcgcAAACGCa -3'
miRNA:   3'- -GCUCUgCGUC---------------GCUCUGCUUa--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 3289 0.66 0.999322
Target:  5'- uCGGGccCGCcgGGCG-GGCGGgcgGUGAGCGCc -3'
miRNA:   3'- -GCUCu-GCG--UCGCuCUGCU---UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 5671 0.66 0.999322
Target:  5'- cCGGGGCGCGG--GGGCGGccGgcGGCGCc -3'
miRNA:   3'- -GCUCUGCGUCgcUCUGCU--UauUUGCG- -5'
30999 5' -49 NC_006560.1 + 80037 0.66 0.999322
Target:  5'- cCGAGACacCGGCGccccggacacccGGGCGGucGGACGCc -3'
miRNA:   3'- -GCUCUGc-GUCGC------------UCUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 112820 0.66 0.999322
Target:  5'- gGAGGCGCucGCGcagcugguGGGCGAcUucACGCu -3'
miRNA:   3'- gCUCUGCGu-CGC--------UCUGCUuAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 146847 0.66 0.999322
Target:  5'- gCGGcGGCGCggGGCGGGGCG-----GCGCc -3'
miRNA:   3'- -GCU-CUGCG--UCGCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 33419 0.66 0.999322
Target:  5'- gGGGAgCGcCGGCGGGAgGAGgggGGuccccGCGCa -3'
miRNA:   3'- gCUCU-GC-GUCGCUCUgCUUa--UU-----UGCG- -5'
30999 5' -49 NC_006560.1 + 137151 0.66 0.999322
Target:  5'- cCGAGcuccugGCGCu-CGGGGCGGA-GGGCGCg -3'
miRNA:   3'- -GCUC------UGCGucGCUCUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 45400 0.66 0.999308
Target:  5'- cCGGGGCGUccGUGAuguugugGACGGA-GAACGCg -3'
miRNA:   3'- -GCUCUGCGu-CGCU-------CUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 73042 0.66 0.999165
Target:  5'- cCGAGugcuCGCGGCu-GACGGuc-AACGCc -3'
miRNA:   3'- -GCUCu---GCGUCGcuCUGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 97068 0.66 0.999165
Target:  5'- gCGGGAgGUGGaCGAGAUGcu---GCGCg -3'
miRNA:   3'- -GCUCUgCGUC-GCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 97373 0.66 0.999165
Target:  5'- aGcAGACGCGGCGgccggccggGGGCGAccccggGGAgGCg -3'
miRNA:   3'- gC-UCUGCGUCGC---------UCUGCUua----UUUgCG- -5'
30999 5' -49 NC_006560.1 + 115736 0.66 0.999165
Target:  5'- gCGcGACGCGG-GAGGCG-----GCGCa -3'
miRNA:   3'- -GCuCUGCGUCgCUCUGCuuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 126038 0.66 0.999165
Target:  5'- aCGAGGCGaccccgugGGCGGGgGCGAu--GugGCa -3'
miRNA:   3'- -GCUCUGCg-------UCGCUC-UGCUuauUugCG- -5'
30999 5' -49 NC_006560.1 + 134746 0.66 0.999165
Target:  5'- gCGAuGCGCGcCGAGuCGAAggcGCGCg -3'
miRNA:   3'- -GCUcUGCGUcGCUCuGCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 137245 0.66 0.999165
Target:  5'- gGGGGCGCGG-GcGGCGGGc-GACGCc -3'
miRNA:   3'- gCUCUGCGUCgCuCUGCUUauUUGCG- -5'
30999 5' -49 NC_006560.1 + 42600 0.66 0.999165
Target:  5'- aGAGACGC-GCGucccGCGu---GACGCg -3'
miRNA:   3'- gCUCUGCGuCGCuc--UGCuuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 59421 0.66 0.999165
Target:  5'- gCGAGGgggccCGguGCG-GACGAGggGggUGCg -3'
miRNA:   3'- -GCUCU-----GCguCGCuCUGCUUa-UuuGCG- -5'
30999 5' -49 NC_006560.1 + 56034 0.66 0.999165
Target:  5'- aCGAGGCGCuGCGuGGgGAAgguccCGUc -3'
miRNA:   3'- -GCUCUGCGuCGCuCUgCUUauuu-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.