miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 143696 0.76 0.821124
Target:  5'- gGGGAgGgGGCGGGACGAGgcgagagcGGGCGCg -3'
miRNA:   3'- gCUCUgCgUCGCUCUGCUUa-------UUUGCG- -5'
30999 5' -49 NC_006560.1 + 143603 0.72 0.939942
Target:  5'- aGAGGCGUggcGGCGAGACaGAG-AGGCGg -3'
miRNA:   3'- gCUCUGCG---UCGCUCUG-CUUaUUUGCg -5'
30999 5' -49 NC_006560.1 + 143012 0.75 0.863101
Target:  5'- cCGAGACGCccGGCGGGACaGGUAGGuuccucccCGCg -3'
miRNA:   3'- -GCUCUGCG--UCGCUCUGcUUAUUU--------GCG- -5'
30999 5' -49 NC_006560.1 + 142723 0.66 0.998497
Target:  5'- cCGAGGCGCccGGgGGGcccgGCGGAgcccGGCGCc -3'
miRNA:   3'- -GCUCUGCG--UCgCUC----UGCUUau--UUGCG- -5'
30999 5' -49 NC_006560.1 + 142677 0.71 0.971093
Target:  5'- uGAGGgGCGGCGgcGGAcCGGAggGGGCGCc -3'
miRNA:   3'- gCUCUgCGUCGC--UCU-GCUUa-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 142282 0.66 0.998979
Target:  5'- cCGGGAUaaaagGCGGCGGGcGCGGcc-GGCGCc -3'
miRNA:   3'- -GCUCUG-----CGUCGCUC-UGCUuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 142195 0.7 0.981273
Target:  5'- gGAGGCGCGGCcuccGGGCGGc---GCGCc -3'
miRNA:   3'- gCUCUGCGUCGc---UCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 141770 0.7 0.981273
Target:  5'- uGGcGCGCGGCGAGAgCGGccgcguGUAAACGg -3'
miRNA:   3'- gCUcUGCGUCGCUCU-GCU------UAUUUGCg -5'
30999 5' -49 NC_006560.1 + 140633 0.69 0.988496
Target:  5'- --uGACGCAGcCGGGGgGGAcGGGCGUg -3'
miRNA:   3'- gcuCUGCGUC-GCUCUgCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 139781 0.75 0.855126
Target:  5'- gCGcGAUGCGGCGAGcCGAcgGacGACGCu -3'
miRNA:   3'- -GCuCUGCGUCGCUCuGCUuaU--UUGCG- -5'
30999 5' -49 NC_006560.1 + 139714 0.71 0.961206
Target:  5'- -uGGACGCGGgguCGGGGCGGAUc-GCGCu -3'
miRNA:   3'- gcUCUGCGUC---GCUCUGCUUAuuUGCG- -5'
30999 5' -49 NC_006560.1 + 139676 0.75 0.863101
Target:  5'- uCGAGA-GCGGCGA--CGggUGAGCGUa -3'
miRNA:   3'- -GCUCUgCGUCGCUcuGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 139573 0.68 0.994166
Target:  5'- aCGAGAcCGCGGCcucacGugGAccagucgAUGGGCGCg -3'
miRNA:   3'- -GCUCU-GCGUCGcu---CugCU-------UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 139536 0.68 0.992321
Target:  5'- aGGGACGgggGGCgGGGGCGGAaGGGCGUg -3'
miRNA:   3'- gCUCUGCg--UCG-CUCUGCUUaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 139394 0.66 0.998979
Target:  5'- gGAGGCGaggaCGGCGAgcGugGAggGAACGg -3'
miRNA:   3'- gCUCUGC----GUCGCU--CugCUuaUUUGCg -5'
30999 5' -49 NC_006560.1 + 139321 0.67 0.998191
Target:  5'- -cGGGCGCGGgaGAGGCGG----GCGCc -3'
miRNA:   3'- gcUCUGCGUCg-CUCUGCUuauuUGCG- -5'
30999 5' -49 NC_006560.1 + 139108 0.66 0.999057
Target:  5'- aCGAcGACGUcuuggugcaggcgauGGCGAgguuGACGAGcgagAGGCGCa -3'
miRNA:   3'- -GCU-CUGCG---------------UCGCU----CUGCUUa---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 138786 0.85 0.365989
Target:  5'- gCGGGAU-CGGCGAGGCGggUGGACGUg -3'
miRNA:   3'- -GCUCUGcGUCGCUCUGCuuAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 138722 1.14 0.007294
Target:  5'- cCGAGACGCAGCGAGACGAAUAAACGCg -3'
miRNA:   3'- -GCUCUGCGUCGCUCUGCUUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 137245 0.66 0.999165
Target:  5'- gGGGGCGCGG-GcGGCGGGc-GACGCc -3'
miRNA:   3'- gCUCUGCGUCgCuCUGCUUauUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.