miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 3' -59.2 NC_006560.1 + 119549 0.66 0.780151
Target:  5'- -cGCgGGacccCCAUGGCCGgGcGCGCCGc -3'
miRNA:   3'- cuCGaCC----GGUACCGGUgCuUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 66551 0.66 0.780151
Target:  5'- cGGC-GGCCucccUGGCguCGuACGCCGGg -3'
miRNA:   3'- cUCGaCCGGu---ACCGguGCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 66065 0.66 0.780151
Target:  5'- gGGGCgggggGGCCAUGuCCuCGA-CGCCGu -3'
miRNA:   3'- -CUCGa----CCGGUACcGGuGCUuGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 64459 0.66 0.780151
Target:  5'- cAGCUGGCUcucGUGGgCGCGca-GCCGc -3'
miRNA:   3'- cUCGACCGG---UACCgGUGCuugCGGCu -5'
31001 3' -59.2 NC_006560.1 + 34196 0.66 0.780151
Target:  5'- uGGGgUGGUCGgggggacgggGGCgGgGGACGCCGGg -3'
miRNA:   3'- -CUCgACCGGUa---------CCGgUgCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 27716 0.66 0.780151
Target:  5'- cGAGCgcGGCCccGGUagCGCGGAC-CCGAu -3'
miRNA:   3'- -CUCGa-CCGGuaCCG--GUGCUUGcGGCU- -5'
31001 3' -59.2 NC_006560.1 + 4204 0.66 0.774642
Target:  5'- cGGC-GGCCAUGGCguagcccaggugcggCACGGcGCGCgCGAc -3'
miRNA:   3'- cUCGaCCGGUACCG---------------GUGCU-UGCG-GCU- -5'
31001 3' -59.2 NC_006560.1 + 32933 0.66 0.770944
Target:  5'- aGGGCagggGGCCGUcGCCGCcGGCGgCGAc -3'
miRNA:   3'- -CUCGa---CCGGUAcCGGUGcUUGCgGCU- -5'
31001 3' -59.2 NC_006560.1 + 126550 0.66 0.770944
Target:  5'- aGGCgaacagGGCCAcgagggcgagGGCCACGcgGACGCCc- -3'
miRNA:   3'- cUCGa-----CCGGUa---------CCGGUGC--UUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 15242 0.66 0.770944
Target:  5'- -cGC-GGCCGgugcGGUCggggagGCGGACGCCGGg -3'
miRNA:   3'- cuCGaCCGGUa---CCGG------UGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 103735 0.66 0.770944
Target:  5'- -cGCcgGGCCAUGGCgCcCGuGCgGCCGGg -3'
miRNA:   3'- cuCGa-CCGGUACCG-GuGCuUG-CGGCU- -5'
31001 3' -59.2 NC_006560.1 + 74161 0.66 0.770017
Target:  5'- cGAGCUGGCCcaGGCCauccacaagaucaACGAGCGg--- -3'
miRNA:   3'- -CUCGACCGGuaCCGG-------------UGCUUGCggcu -5'
31001 3' -59.2 NC_006560.1 + 107999 0.66 0.761617
Target:  5'- cGGCcgGGUCGUcGCCGCGcuGCGCCGc -3'
miRNA:   3'- cUCGa-CCGGUAcCGGUGCu-UGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 149487 0.66 0.761617
Target:  5'- cGGC-GGCCcgGGCCGacgcuccccgccCGGGcCGCCGGc -3'
miRNA:   3'- cUCGaCCGGuaCCGGU------------GCUU-GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 136028 0.66 0.761617
Target:  5'- cGAGUuccgGGCCcUGGCCGCgcugGAGCGCa-- -3'
miRNA:   3'- -CUCGa---CCGGuACCGGUG----CUUGCGgcu -5'
31001 3' -59.2 NC_006560.1 + 106521 0.66 0.761617
Target:  5'- aGGC-GGCgGUGGCCcCcAGCGCCGc -3'
miRNA:   3'- cUCGaCCGgUACCGGuGcUUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 93993 0.66 0.761617
Target:  5'- gGAGggGGCCggGGCgGgGGACGUCGc -3'
miRNA:   3'- -CUCgaCCGGuaCCGgUgCUUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 60754 0.66 0.761617
Target:  5'- cAGCUGGCgGgGGaCgACGGcgacuACGCCGAc -3'
miRNA:   3'- cUCGACCGgUaCC-GgUGCU-----UGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 50806 0.66 0.761617
Target:  5'- cGGgUGGCCGcgaacGGCCgccugugcgGCGAGCGCCu- -3'
miRNA:   3'- cUCgACCGGUa----CCGG---------UGCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 27819 0.66 0.761617
Target:  5'- -cGCggGGCCcuuccgcGGCCGgGggUGCCGGg -3'
miRNA:   3'- cuCGa-CCGGua-----CCGGUgCuuGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.