miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 81034 0.66 0.9285
Target:  5'- -aGUuGCGCaccGCGGCGCGCUCGcCc-- -3'
miRNA:   3'- ggUAcUGCG---UGCCGCGCGAGCuGaag -5'
31003 3' -55.9 NC_006560.1 + 9108 0.66 0.9285
Target:  5'- ----cGCGCGCGGCGCGCggcACgUCa -3'
miRNA:   3'- gguacUGCGUGCCGCGCGagcUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 85758 0.66 0.9285
Target:  5'- --uUGGCGUA-GGCGCGCggguggCGGCUcagcUCg -3'
miRNA:   3'- gguACUGCGUgCCGCGCGa-----GCUGA----AG- -5'
31003 3' -55.9 NC_006560.1 + 107101 0.66 0.9285
Target:  5'- cCCcUGGCcCGCGGCGUGggcuaUCGGCUggUCg -3'
miRNA:   3'- -GGuACUGcGUGCCGCGCg----AGCUGA--AG- -5'
31003 3' -55.9 NC_006560.1 + 132907 0.66 0.923163
Target:  5'- ---cGACGUGCGGCG-GC-CGACggCg -3'
miRNA:   3'- gguaCUGCGUGCCGCgCGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 112502 0.66 0.923163
Target:  5'- uCCggGACGCGCGGgGCcuggaGCUCaGCg-- -3'
miRNA:   3'- -GGuaCUGCGUGCCgCG-----CGAGcUGaag -5'
31003 3' -55.9 NC_006560.1 + 90346 0.66 0.923163
Target:  5'- gCCGUcGCGCggGCGGCcgcccaccugGCGUUCGACg-- -3'
miRNA:   3'- -GGUAcUGCG--UGCCG----------CGCGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 135093 0.66 0.923163
Target:  5'- gCCGUaccGGCGCACcaGGCGCucggGCUCGAg--- -3'
miRNA:   3'- -GGUA---CUGCGUG--CCGCG----CGAGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 48684 0.66 0.923163
Target:  5'- ---cGGCGCGCcuGGCGCGCgUGAUguUUCu -3'
miRNA:   3'- gguaCUGCGUG--CCGCGCGaGCUG--AAG- -5'
31003 3' -55.9 NC_006560.1 + 4155 0.66 0.923163
Target:  5'- cUCAUGGC-CACGGCG-GCggCGGCg-- -3'
miRNA:   3'- -GGUACUGcGUGCCGCgCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 131857 0.66 0.91759
Target:  5'- ---cGGCGaCGCGGCGCGCgcugCGggGCgcggUCg -3'
miRNA:   3'- gguaCUGC-GUGCCGCGCGa---GC--UGa---AG- -5'
31003 3' -55.9 NC_006560.1 + 62667 0.66 0.91759
Target:  5'- gCUGUGguccACGUACGGgGCGCggUCGGCg-- -3'
miRNA:   3'- -GGUAC----UGCGUGCCgCGCG--AGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 43432 0.66 0.91759
Target:  5'- gCGUcGGCGCGCGGCaCGUgCGGCa-- -3'
miRNA:   3'- gGUA-CUGCGUGCCGcGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 667 0.66 0.91759
Target:  5'- aCCccGGCGCgcccGCGGCGCggGCUCGuCg-- -3'
miRNA:   3'- -GGuaCUGCG----UGCCGCG--CGAGCuGaag -5'
31003 3' -55.9 NC_006560.1 + 50201 0.66 0.91759
Target:  5'- cCCcgGACGCccccgggcggcgGCGGCGCGCgUCcGCc-- -3'
miRNA:   3'- -GGuaCUGCG------------UGCCGCGCG-AGcUGaag -5'
31003 3' -55.9 NC_006560.1 + 73627 0.66 0.91759
Target:  5'- aCCggGAggUGCGCGGCGCcCUgGACg-- -3'
miRNA:   3'- -GGuaCU--GCGUGCCGCGcGAgCUGaag -5'
31003 3' -55.9 NC_006560.1 + 115453 0.66 0.911781
Target:  5'- aUCGUGGCGCGgcUGGUGgCGCgCGGCaUCc -3'
miRNA:   3'- -GGUACUGCGU--GCCGC-GCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 101706 0.66 0.911781
Target:  5'- ---cGGCG-GCGGCGCGgUUGACcUCg -3'
miRNA:   3'- gguaCUGCgUGCCGCGCgAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 74449 0.66 0.911781
Target:  5'- ---cGGCGCGCGcGCGCGCgccaUCGAg--- -3'
miRNA:   3'- gguaCUGCGUGC-CGCGCG----AGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 30565 0.66 0.911781
Target:  5'- ---cGGCGcCGCGGCGCGCgCG-CcUCg -3'
miRNA:   3'- gguaCUGC-GUGCCGCGCGaGCuGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.