miRNA display CGI


Results 1 - 20 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 144125 0.66 0.886119
Target:  5'- ---uGGCuccGGCGGccGCGGCGGCGCc- -3'
miRNA:   3'- uauuUCGcu-UUGCC--CGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 43421 0.66 0.886119
Target:  5'- ---cGGCGccGgGGGCGuCGGCGCGc -3'
miRNA:   3'- uauuUCGCuuUgCCCGCcGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 135381 0.66 0.886119
Target:  5'- ----cGCGggG-GGGCGGaGGcCGCGGg -3'
miRNA:   3'- uauuuCGCuuUgCCCGCCgCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 134521 0.66 0.886119
Target:  5'- -gGAGGCGGcguuGCGGacGCGGCaGaCGCGGg -3'
miRNA:   3'- uaUUUCGCUu---UGCC--CGCCGcC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 131382 0.66 0.886119
Target:  5'- -gGGGGCGcggugcuGGCGGGCGcUGGcCGCGGa -3'
miRNA:   3'- uaUUUCGCu------UUGCCCGCcGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 87641 0.66 0.886119
Target:  5'- -gGAuGUGcuccAGGCGGGCGGCGGC-Ca- -3'
miRNA:   3'- uaUUuCGC----UUUGCCCGCCGCCGcGcu -5'
31003 5' -56.6 NC_006560.1 + 81432 0.66 0.886119
Target:  5'- --cGGGcCGggGCGGccccggucGCGGCgucgGGCGCGGc -3'
miRNA:   3'- uauUUC-GCuuUGCC--------CGCCG----CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 74191 0.66 0.886119
Target:  5'- --cGAGCGGGugGuGCGGCGGaGCu- -3'
miRNA:   3'- uauUUCGCUUugCcCGCCGCCgCGcu -5'
31003 5' -56.6 NC_006560.1 + 52518 0.66 0.885427
Target:  5'- ---cGGCGGAgucccugGCGgaGGCGGgGGCGuCGAg -3'
miRNA:   3'- uauuUCGCUU-------UGC--CCGCCgCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 5516 0.66 0.879103
Target:  5'- ----nGCGAGGgucGGCGGCGGuCGCGc -3'
miRNA:   3'- uauuuCGCUUUgc-CCGCCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 85558 0.66 0.879103
Target:  5'- ----uGgGggGCGGG-GGCGGCuCGGg -3'
miRNA:   3'- uauuuCgCuuUGCCCgCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 1080 0.66 0.879103
Target:  5'- -cGGGGCaGAAGCcgcccgccaGGCuccccGGCGGCGCGAg -3'
miRNA:   3'- uaUUUCG-CUUUGc--------CCG-----CCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 139331 0.66 0.879103
Target:  5'- -aGAGGCG-GGCGccucGGCGGCccGCGCGGg -3'
miRNA:   3'- uaUUUCGCuUUGC----CCGCCGc-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 58232 0.66 0.878389
Target:  5'- -cGGAGCGAcGgGGGcCGGgGGCcgccgagGCGAg -3'
miRNA:   3'- uaUUUCGCUuUgCCC-GCCgCCG-------CGCU- -5'
31003 5' -56.6 NC_006560.1 + 112139 0.66 0.878389
Target:  5'- ---cGGCGGugGGCGGGCucaaccaggagccGGUGGaCGCGGc -3'
miRNA:   3'- uauuUCGCU--UUGCCCG-------------CCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 26289 0.66 0.874787
Target:  5'- -gGGAGCcuGGCGGGCggcuucugccccgucGGCGGcCGCGu -3'
miRNA:   3'- uaUUUCGcuUUGCCCG---------------CCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 102407 0.66 0.871866
Target:  5'- ---cGGCGGccuCGGGC-GCGGcCGCGGc -3'
miRNA:   3'- uauuUCGCUuu-GCCCGcCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 131875 0.66 0.871866
Target:  5'- ----uGCGggGCGcGGUcGCGGCGUa- -3'
miRNA:   3'- uauuuCGCuuUGC-CCGcCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 126799 0.66 0.871866
Target:  5'- -gGGGGCGGAcaGCGGGaaguugagGGCGGCGa-- -3'
miRNA:   3'- uaUUUCGCUU--UGCCCg-------CCGCCGCgcu -5'
31003 5' -56.6 NC_006560.1 + 95164 0.66 0.871866
Target:  5'- ---uGGCGAGccugGGGCGcuGCGuGCGCGAg -3'
miRNA:   3'- uauuUCGCUUug--CCCGC--CGC-CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.