miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 78114 0.65 0.809985
Target:  5'- gGCGCuGGUGgcGGUCagcgUGCUCGGCcgcauguGCCUg -3'
miRNA:   3'- -CGCGuCCAU--CCAGg---GCGAGUCG-------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 118980 0.65 0.809985
Target:  5'- aGCGCguggcucGGGgAGGUCgCGC--GGCGCCUg -3'
miRNA:   3'- -CGCG-------UCCaUCCAGgGCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 76514 0.66 0.805676
Target:  5'- cGCGCGGcgcGUcuucGGGgcgcaCCCGCUgaccgccgcgcgcgaCGGCGCCCc -3'
miRNA:   3'- -CGCGUC---CA----UCCa----GGGCGA---------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 112528 0.66 0.802202
Target:  5'- aGCGUGGGgcGGcaCgUGCU-GGCGCCCg -3'
miRNA:   3'- -CGCGUCCauCCa-GgGCGAgUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 8926 0.66 0.802202
Target:  5'- gGCGCGGGgcgcgGGGggcuuuuaugCgCCGCggGGCGCCg -3'
miRNA:   3'- -CGCGUCCa----UCCa---------G-GGCGagUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 56382 0.66 0.802202
Target:  5'- cGCGCGGGgccggggaGGGUacgguugcCCCGCgCGGgGCCg -3'
miRNA:   3'- -CGCGUCCa-------UCCA--------GGGCGaGUCgUGGg -5'
31005 3' -59.1 NC_006560.1 + 81069 0.66 0.802202
Target:  5'- uCGUGGGUGuGGUCCaCGggCuGCGCCUc -3'
miRNA:   3'- cGCGUCCAU-CCAGG-GCgaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 14204 0.66 0.802202
Target:  5'- gGCGUGGGguGGUCggGCggGGCGCCCg -3'
miRNA:   3'- -CGCGUCCauCCAGggCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 45780 0.66 0.802202
Target:  5'- gGCGCGGGcucGGU-CCGC-CGGgGCCUu -3'
miRNA:   3'- -CGCGUCCau-CCAgGGCGaGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 79848 0.66 0.802202
Target:  5'- gGCGCGGaccgagccGGGccgccCCCGCccccgccacgccUCGGCACCCg -3'
miRNA:   3'- -CGCGUCca------UCCa----GGGCG------------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 75702 0.66 0.802202
Target:  5'- cCGCcuGGacUGGGggCCCGCguUCGGCGCCg -3'
miRNA:   3'- cGCGu-CC--AUCCa-GGGCG--AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 135591 0.66 0.80133
Target:  5'- cGCGCGGGUGccccggccgcaguGGUUCCGggacguggCGGCGCUg -3'
miRNA:   3'- -CGCGUCCAU-------------CCAGGGCga------GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 53175 0.66 0.799581
Target:  5'- gGUGgAGGUGGuGUCCaucguccaccaccaCGCcCAGUACCUg -3'
miRNA:   3'- -CGCgUCCAUC-CAGG--------------GCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 135389 0.66 0.793415
Target:  5'- gGCGgAGGccgcggGGGUgUCGCUCGGCcaugACCa -3'
miRNA:   3'- -CGCgUCCa-----UCCAgGGCGAGUCG----UGGg -5'
31005 3' -59.1 NC_006560.1 + 145831 0.66 0.793415
Target:  5'- cGCGCGGcGggccgGGGgcgcCCCcCUCGGCcCCCc -3'
miRNA:   3'- -CGCGUC-Ca----UCCa---GGGcGAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 94379 0.66 0.793415
Target:  5'- -aGCAGGcccAGGUCCgGCUCgacgacaacgAGCugCg -3'
miRNA:   3'- cgCGUCCa--UCCAGGgCGAG----------UCGugGg -5'
31005 3' -59.1 NC_006560.1 + 140373 0.66 0.792529
Target:  5'- gGCGCGGcccgAGGUCCgguCGUccccgggggggguUCAGCGCCg -3'
miRNA:   3'- -CGCGUCca--UCCAGG---GCG-------------AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 16311 0.66 0.785388
Target:  5'- gGCGCGGGcccgcgCCCGCgaggcgcaggcacagCAGCGCCg -3'
miRNA:   3'- -CGCGUCCaucca-GGGCGa--------------GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 134103 0.66 0.784489
Target:  5'- cGCGCAGGcgcucgauGGUCCCGaagaGGUuguugauguaGCCCu -3'
miRNA:   3'- -CGCGUCCau------CCAGGGCgag-UCG----------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 70925 0.66 0.784489
Target:  5'- gGCGCcuGGGgggacuacagccUGGGg-CCGCUCGGCACgaCCa -3'
miRNA:   3'- -CGCG--UCC------------AUCCagGGCGAGUCGUG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.