Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31005 | 3' | -59.1 | NC_006560.1 | + | 134103 | 0.66 | 0.784489 |
Target: 5'- cGCGCAGGcgcucgauGGUCCCGaagaGGUuguugauguaGCCCu -3' miRNA: 3'- -CGCGUCCau------CCAGGGCgag-UCG----------UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 3521 | 0.66 | 0.781786 |
Target: 5'- gGCGCAGGcucuGGUUCCggaagagcaggucgGCggcggCGGCGCCg -3' miRNA: 3'- -CGCGUCCau--CCAGGG--------------CGa----GUCGUGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 103076 | 0.66 | 0.780882 |
Target: 5'- cCGCGGGgacggggggaccGGUCCCGCccccgCGG-ACCCg -3' miRNA: 3'- cGCGUCCau----------CCAGGGCGa----GUCgUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 11739 | 0.66 | 0.775433 |
Target: 5'- gGCGCGGGg----CCCGCagCGGCGCguCCg -3' miRNA: 3'- -CGCGUCCauccaGGGCGa-GUCGUG--GG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 147919 | 0.66 | 0.775433 |
Target: 5'- gGgGCGGGggagAGGgggCCCGC--GGCcCCCg -3' miRNA: 3'- -CgCGUCCa---UCCa--GGGCGagUCGuGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 17769 | 0.66 | 0.775433 |
Target: 5'- gGCaGCGGGUAGucGUCguCCGCUCgacggccuccGGCcGCCCg -3' miRNA: 3'- -CG-CGUCCAUC--CAG--GGCGAG----------UCG-UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 117988 | 0.66 | 0.775433 |
Target: 5'- gGCGCGGc--GGcgCCCGCggCGGCGgCCg -3' miRNA: 3'- -CGCGUCcauCCa-GGGCGa-GUCGUgGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 134458 | 0.66 | 0.775433 |
Target: 5'- gGCGCGGGcGGccCCCGCgggcccgCGGUcCCCg -3' miRNA: 3'- -CGCGUCCaUCcaGGGCGa------GUCGuGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 43769 | 0.66 | 0.775433 |
Target: 5'- uGCGCGGGccGG-CgCCGUugaccgcgacggUCAGCGCCa -3' miRNA: 3'- -CGCGUCCauCCaG-GGCG------------AGUCGUGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 3243 | 0.66 | 0.766254 |
Target: 5'- cGUGUGGGcGGG-CCCGggCGGCGCgCg -3' miRNA: 3'- -CGCGUCCaUCCaGGGCgaGUCGUGgG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 32893 | 0.66 | 0.766254 |
Target: 5'- cCGCGGGgGGGcgcgCCCGCggGGUAgCCg -3' miRNA: 3'- cGCGUCCaUCCa---GGGCGagUCGUgGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 35960 | 0.66 | 0.766254 |
Target: 5'- gGCGCGGGggcgGGGcuuguuaacuuUCCCGC-CAccuuCGCCCc -3' miRNA: 3'- -CGCGUCCa---UCC-----------AGGGCGaGUc---GUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 40503 | 0.66 | 0.766254 |
Target: 5'- gGCGCAGG-AGGaUCUCGCa-GGcCACCg -3' miRNA: 3'- -CGCGUCCaUCC-AGGGCGagUC-GUGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 53833 | 0.66 | 0.766254 |
Target: 5'- -gGCGGGccggcccGGG-CCgGC-CGGCACCCg -3' miRNA: 3'- cgCGUCCa------UCCaGGgCGaGUCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 2560 | 0.66 | 0.766254 |
Target: 5'- gGCGCGGcGcAGGUCgCGCgCGGCggGCCa -3' miRNA: 3'- -CGCGUC-CaUCCAGgGCGaGUCG--UGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 6337 | 0.66 | 0.766254 |
Target: 5'- cGCGCGGGc--GcCCCGCccCGGCccGCCCu -3' miRNA: 3'- -CGCGUCCaucCaGGGCGa-GUCG--UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 10463 | 0.66 | 0.766254 |
Target: 5'- cGCGCGGGggccaCgCCGcCUCGGgGCCCg -3' miRNA: 3'- -CGCGUCCauccaG-GGC-GAGUCgUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 47343 | 0.66 | 0.766254 |
Target: 5'- cGCGguGGUgcccAGGaaaCUGCacuUCAGCACCg -3' miRNA: 3'- -CGCguCCA----UCCag-GGCG---AGUCGUGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 149850 | 0.66 | 0.766254 |
Target: 5'- cCGCGGGcGGGagaCCC-C-CGGCACCCc -3' miRNA: 3'- cGCGUCCaUCCa--GGGcGaGUCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 273 | 0.67 | 0.756961 |
Target: 5'- gGC-CGGGUcgcgAGG-CCCGCuUCGGUcCCCa -3' miRNA: 3'- -CGcGUCCA----UCCaGGGCG-AGUCGuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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