miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 111695 0.66 0.726958
Target:  5'- -gGCAagGCCGuGCggagccucgacgacgUCGCGcGCCACCUg -3'
miRNA:   3'- caUGUggCGGCuCG---------------AGCGC-CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 40106 0.66 0.723148
Target:  5'- -cGgGCCGCCGGGCggagacUCGCGucguCCAUCUg -3'
miRNA:   3'- caUgUGGCGGCUCG------AGCGCc---GGUGGG- -5'
31006 5' -61 NC_006560.1 + 116795 0.66 0.723148
Target:  5'- cGUACA-CGuaGAGCUCGggggccaugaGGCCGCCg -3'
miRNA:   3'- -CAUGUgGCggCUCGAGCg---------CCGGUGGg -5'
31006 5' -61 NC_006560.1 + 10235 0.66 0.723148
Target:  5'- gGUGgGCgGCgGgGGCgcgggUCGCGGCgGCCCc -3'
miRNA:   3'- -CAUgUGgCGgC-UCG-----AGCGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 19427 0.66 0.723148
Target:  5'- -gGCGCUcgGCUGAGCUgGUGuCCGCCa -3'
miRNA:   3'- caUGUGG--CGGCUCGAgCGCcGGUGGg -5'
31006 5' -61 NC_006560.1 + 23981 0.66 0.723148
Target:  5'- -cGCGCaagaagaGCCG-GCcCGCGcCCGCCCg -3'
miRNA:   3'- caUGUGg------CGGCuCGaGCGCcGGUGGG- -5'
31006 5' -61 NC_006560.1 + 26937 0.66 0.723148
Target:  5'- -gAgGCCGCgGGGC-CGCGGagGCCg -3'
miRNA:   3'- caUgUGGCGgCUCGaGCGCCggUGGg -5'
31006 5' -61 NC_006560.1 + 27369 0.66 0.723148
Target:  5'- -cGCcCCGCCGGGaaaCGCGGCgCggggggccggGCCCu -3'
miRNA:   3'- caUGuGGCGGCUCga-GCGCCG-G----------UGGG- -5'
31006 5' -61 NC_006560.1 + 29265 0.66 0.723148
Target:  5'- -gGC-CCGcCCGGGUucucucuccuccUCGcCGGCCcGCCCg -3'
miRNA:   3'- caUGuGGC-GGCUCG------------AGC-GCCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 38924 0.66 0.723148
Target:  5'- gGUACAg-GCCGGGUcCGUGcGCCGCCa -3'
miRNA:   3'- -CAUGUggCGGCUCGaGCGC-CGGUGGg -5'
31006 5' -61 NC_006560.1 + 39394 0.66 0.723148
Target:  5'- -cGgGCCGaacuCGGGCUCGgGGgCGCCg -3'
miRNA:   3'- caUgUGGCg---GCUCGAGCgCCgGUGGg -5'
31006 5' -61 NC_006560.1 + 54500 0.66 0.723148
Target:  5'- -cGCAgCGCCGGGCccUCGCagaacuGGUCGauCCCg -3'
miRNA:   3'- caUGUgGCGGCUCG--AGCG------CCGGU--GGG- -5'
31006 5' -61 NC_006560.1 + 87048 0.66 0.723148
Target:  5'- -gAUGCCGgCGAGC-CG-GGCCACggCCg -3'
miRNA:   3'- caUGUGGCgGCUCGaGCgCCGGUG--GG- -5'
31006 5' -61 NC_006560.1 + 123041 0.66 0.723148
Target:  5'- ---aGCUGgCGGGCccgCGCGGCgagCACCCc -3'
miRNA:   3'- caugUGGCgGCUCGa--GCGCCG---GUGGG- -5'
31006 5' -61 NC_006560.1 + 131508 0.66 0.723148
Target:  5'- -cGCgGCCGUCGGGCU-GCGGCUcgaggcggcgGCCg -3'
miRNA:   3'- caUG-UGGCGGCUCGAgCGCCGG----------UGGg -5'
31006 5' -61 NC_006560.1 + 24349 0.66 0.723148
Target:  5'- -gGC-CCGCUGcGC-CGCGccGCCGCCUg -3'
miRNA:   3'- caUGuGGCGGCuCGaGCGC--CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 55106 0.66 0.722193
Target:  5'- -gGCGCCGCCucuccGGCcccucccUCGCcGUCACCCc -3'
miRNA:   3'- caUGUGGCGGc----UCG-------AGCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 149263 0.66 0.721238
Target:  5'- -gGCuuCCGCCGGGCgccucccccuCGGCCcGCCCc -3'
miRNA:   3'- caUGu-GGCGGCUCGagc-------GCCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 84785 0.66 0.71741
Target:  5'- -cGCGCCuuucuggccucgcugGCUGuGCUgGCGGaCCGCCa -3'
miRNA:   3'- caUGUGG---------------CGGCuCGAgCGCC-GGUGGg -5'
31006 5' -61 NC_006560.1 + 125005 0.66 0.713571
Target:  5'- -gACGCCGgCGAcCcCGUGGUCGCCg -3'
miRNA:   3'- caUGUGGCgGCUcGaGCGCCGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.