miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 6496 0.66 0.772589
Target:  5'- -cGCGCCGacggaaCCUCGcAGGUgagcggucgUCCCGGGa -3'
miRNA:   3'- gaUGUGGUg-----GGAGC-UCCA---------GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 145536 0.66 0.772589
Target:  5'- -gAC-CCGCCCUCGg---CgCCGGGGa -3'
miRNA:   3'- gaUGuGGUGGGAGCuccaGgGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 119236 0.66 0.772589
Target:  5'- -cGgACCGCCCaaucgUCGuGGUCUUCGGcGGu -3'
miRNA:   3'- gaUgUGGUGGG-----AGCuCCAGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 32757 0.66 0.772589
Target:  5'- -cGCGCCgGCCgggguCUCGGGGUCCgaGGGc -3'
miRNA:   3'- gaUGUGG-UGG-----GAGCUCCAGGggCCCc -5'
31007 5' -60.6 NC_006560.1 + 8261 0.66 0.772589
Target:  5'- gUGCGCCccguGCCCUCccccgCCCaCGGGGg -3'
miRNA:   3'- gAUGUGG----UGGGAGcuccaGGG-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 30664 0.66 0.772589
Target:  5'- --cCGCCGCCCcccggccgucUCGGGGccccccguggCCCCGGuGGc -3'
miRNA:   3'- gauGUGGUGGG----------AGCUCCa---------GGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 54854 0.66 0.771693
Target:  5'- -cACGCCgccgccgggaggcGCCCgggagccgCGAGacGcCCCCGGGGg -3'
miRNA:   3'- gaUGUGG-------------UGGGa-------GCUC--CaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 78314 0.66 0.771693
Target:  5'- uCUAC-CgGCCCUCGGgccagcgcgugcuGGUCCgCGGcGGc -3'
miRNA:   3'- -GAUGuGgUGGGAGCU-------------CCAGGgGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 147589 0.66 0.764481
Target:  5'- gUGCgGCC-CCCgagggugacggaggcCGGGGccgccUCCCCGGGGa -3'
miRNA:   3'- gAUG-UGGuGGGa--------------GCUCC-----AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 47717 0.66 0.763575
Target:  5'- ---aGCCGCCCcuccccgcuUCGGGG-CCCCGGc- -3'
miRNA:   3'- gaugUGGUGGG---------AGCUCCaGGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 47995 0.66 0.763575
Target:  5'- uCU-CGCCGCCCcCGcccgccGGcCCCCGGGc -3'
miRNA:   3'- -GAuGUGGUGGGaGCu-----CCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 58839 0.66 0.763575
Target:  5'- -aGCugCA-CgUCGGGGcggCCCUGGGGc -3'
miRNA:   3'- gaUGugGUgGgAGCUCCa--GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 135575 0.66 0.763575
Target:  5'- -gGCACCGCCUggagcccgCGcGGGUgCCCCGGc- -3'
miRNA:   3'- gaUGUGGUGGGa-------GC-UCCA-GGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 78219 0.66 0.763575
Target:  5'- cCUGgACgCGCUgCUCGAGGcgCgCCUGGGGu -3'
miRNA:   3'- -GAUgUG-GUGG-GAGCUCCa-G-GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 10280 0.66 0.763575
Target:  5'- --cCGCC-CCCUCcgcgaGAGGgggcgggCCgCCGGGGa -3'
miRNA:   3'- gauGUGGuGGGAG-----CUCCa------GG-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 18021 0.66 0.763575
Target:  5'- -cGCGCCGCCCgCGAcggcuagcgcGG-CCgCCGGGa -3'
miRNA:   3'- gaUGUGGUGGGaGCU----------CCaGG-GGCCCc -5'
31007 5' -60.6 NC_006560.1 + 149195 0.66 0.763575
Target:  5'- aUAgACCGCCauggcggCGAGGgggcgcggCCCGGGGc -3'
miRNA:   3'- gAUgUGGUGGga-----GCUCCag------GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 35506 0.66 0.761759
Target:  5'- -cGCGCCGCCCg-GAGGccgcgccUCCCauuagggcccgcgCGGGGc -3'
miRNA:   3'- gaUGUGGUGGGagCUCC-------AGGG-------------GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 5135 0.66 0.758115
Target:  5'- -cACACCgacucgcggcgcgggGCCCgggcCGGGG-CCgCGGGGg -3'
miRNA:   3'- gaUGUGG---------------UGGGa---GCUCCaGGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 124329 0.66 0.754454
Target:  5'- -aGCGCCACCUcCGcGGGUUgCUGcGGGg -3'
miRNA:   3'- gaUGUGGUGGGaGC-UCCAGgGGC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.