miRNA display CGI


Results 1 - 20 of 510 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 114041 0.66 0.4475
Target:  5'- gGGUAcacGGCgGCCGUgGCCACGGCgGCc-- -3'
miRNA:   3'- -UCGU---CCG-CGGCG-CGGUGCCGgCGcuu -5'
31008 3' -66 NC_006560.1 + 149990 0.66 0.4475
Target:  5'- cGCuaccGGgGCCGCGCUcgGGaCCGCGGg -3'
miRNA:   3'- uCGu---CCgCGGCGCGGugCC-GGCGCUu -5'
31008 3' -66 NC_006560.1 + 2887 0.66 0.4475
Target:  5'- gAGCAGGaaggagaggcCGCCGCGCgCGgCGGUCcagGCGGg -3'
miRNA:   3'- -UCGUCC----------GCGGCGCG-GU-GCCGG---CGCUu -5'
31008 3' -66 NC_006560.1 + 4296 0.66 0.4475
Target:  5'- aAGCAGGCGCgGUccagcuccacGUCGcCGGCCGUc-- -3'
miRNA:   3'- -UCGUCCGCGgCG----------CGGU-GCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 20924 0.66 0.4475
Target:  5'- gAGCgAGGaggGCCG-GCgGCGGCgGCGAc -3'
miRNA:   3'- -UCG-UCCg--CGGCgCGgUGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 26934 0.66 0.4475
Target:  5'- gGGgAGGcCGCgGgGCCGCggaGGCCGgGGAa -3'
miRNA:   3'- -UCgUCC-GCGgCgCGGUG---CCGGCgCUU- -5'
31008 3' -66 NC_006560.1 + 27386 0.66 0.4475
Target:  5'- cGGCgcgGGGgGCCGgGCCcucccGCGGCgGCGc- -3'
miRNA:   3'- -UCG---UCCgCGGCgCGG-----UGCCGgCGCuu -5'
31008 3' -66 NC_006560.1 + 77181 0.66 0.4475
Target:  5'- cGCAGagcccggacgaGCGCCGCGCgC-CGGaCCuGCGGAu -3'
miRNA:   3'- uCGUC-----------CGCGGCGCG-GuGCC-GG-CGCUU- -5'
31008 3' -66 NC_006560.1 + 99248 0.66 0.4475
Target:  5'- aGGgGGGCGuuG-GCCggagucgcguACGGCUGCGGGu -3'
miRNA:   3'- -UCgUCCGCggCgCGG----------UGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 111246 0.66 0.4475
Target:  5'- uGgGGGCGUucgagCGCGgCACGGCCGaucaGAu -3'
miRNA:   3'- uCgUCCGCG-----GCGCgGUGCCGGCg---CUu -5'
31008 3' -66 NC_006560.1 + 133551 0.66 0.4475
Target:  5'- cGGCGGcGCGCgGCGUgGCGGacguCgGCGAc -3'
miRNA:   3'- -UCGUC-CGCGgCGCGgUGCC----GgCGCUu -5'
31008 3' -66 NC_006560.1 + 149097 0.66 0.4475
Target:  5'- gGGCGGGCGCCGgGgCGuccCCGUGAAu -3'
miRNA:   3'- -UCGUCCGCGGCgCgGUgccGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 517 0.66 0.4475
Target:  5'- -aCGGGCGCCggggggcgGCGgC-CGGCCGCGc- -3'
miRNA:   3'- ucGUCCGCGG--------CGCgGuGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 49788 0.66 0.4475
Target:  5'- cGCGGGCGCUucggGCGCUuCcGUCGCGGu -3'
miRNA:   3'- uCGUCCGCGG----CGCGGuGcCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 95168 0.66 0.4475
Target:  5'- gAGCcugGGGCGCUGCGUgCGCGaGCagCGCGGc -3'
miRNA:   3'- -UCG---UCCGCGGCGCG-GUGC-CG--GCGCUu -5'
31008 3' -66 NC_006560.1 + 124126 0.66 0.4475
Target:  5'- gGGCAcccacGGCGUCGCGgCGcCGGCgGgGGAg -3'
miRNA:   3'- -UCGU-----CCGCGGCGCgGU-GCCGgCgCUU- -5'
31008 3' -66 NC_006560.1 + 55829 0.66 0.446633
Target:  5'- aGGC-GGCGCCGuCGCCcggguaguagucgGCGGCCacGCa-- -3'
miRNA:   3'- -UCGuCCGCGGC-GCGG-------------UGCCGG--CGcuu -5'
31008 3' -66 NC_006560.1 + 23728 0.66 0.446633
Target:  5'- cGGC-GGCGCCGaggccgccgucgcCGCCguGCGcGCCGUGGg -3'
miRNA:   3'- -UCGuCCGCGGC-------------GCGG--UGC-CGGCGCUu -5'
31008 3' -66 NC_006560.1 + 67886 0.66 0.444902
Target:  5'- cGGguGGCGCCGCGaCC-CGaggagacccgggucGCCGCc-- -3'
miRNA:   3'- -UCguCCGCGGCGC-GGuGC--------------CGGCGcuu -5'
31008 3' -66 NC_006560.1 + 26602 0.66 0.442313
Target:  5'- aGGCccagaaAGGaC-CCGCGCCGCgggggggggggacggGGCCGCGGGg -3'
miRNA:   3'- -UCG------UCC-GcGGCGCGGUG---------------CCGGCGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.