miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 129913 0.66 0.968222
Target:  5'- gUGCcugCGCAcGCGcgCGgccgGAGGCGcgcagCCCg -3'
miRNA:   3'- -ACGa--GCGU-CGUuaGCa---CUUCGCa----GGG- -5'
31008 5' -53.6 NC_006560.1 + 115210 0.66 0.968222
Target:  5'- cGCUuuccCGCGGUGAUCGcGcGGGCGcugCCCa -3'
miRNA:   3'- aCGA----GCGUCGUUAGCaC-UUCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 92977 0.66 0.968222
Target:  5'- gGCggCGCGGacGUCGggGAGGCGUUCg -3'
miRNA:   3'- aCGa-GCGUCguUAGCa-CUUCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 307 0.66 0.968222
Target:  5'- cGCaacgCGCAGCcc-CGUGAAG-GcCCCg -3'
miRNA:   3'- aCGa---GCGUCGuuaGCACUUCgCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 43714 0.66 0.968222
Target:  5'- aGCgagCGCAGCGAcUCGccgGgcGCGUacUCCg -3'
miRNA:   3'- aCGa--GCGUCGUU-AGCa--CuuCGCA--GGG- -5'
31008 5' -53.6 NC_006560.1 + 33765 0.66 0.968222
Target:  5'- cGCUCGCGggucgccucGCGGggcCGUGggGCG-CgCg -3'
miRNA:   3'- aCGAGCGU---------CGUUa--GCACuuCGCaGgG- -5'
31008 5' -53.6 NC_006560.1 + 40922 0.66 0.96728
Target:  5'- gGCacagCGCGGCGGggucccgcgggucuUCGgGggGCG-CCCg -3'
miRNA:   3'- aCGa---GCGUCGUU--------------AGCaCuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 112615 0.66 0.965338
Target:  5'- cUGCUCcagGCGGCGAUCcacgGGAGCGagcacguguucugcgCCCu -3'
miRNA:   3'- -ACGAG---CGUCGUUAGca--CUUCGCa--------------GGG- -5'
31008 5' -53.6 NC_006560.1 + 43926 0.66 0.965006
Target:  5'- cGCUCgaaGCGGCAGaCGaacaUGggGCGcacgcgCCCg -3'
miRNA:   3'- aCGAG---CGUCGUUaGC----ACuuCGCa-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 29436 0.66 0.965006
Target:  5'- cGCUCGCGGCcccgCGcuacuccGCGUCCg -3'
miRNA:   3'- aCGAGCGUCGuua-GCacuu---CGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 95191 0.66 0.963999
Target:  5'- aGCagCGCGGCGAgcUCGaGAagaugcugcgggucAGCGUCCa -3'
miRNA:   3'- aCGa-GCGUCGUU--AGCaCU--------------UCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 80142 0.66 0.961569
Target:  5'- gGCUCGgGGCAcugGUCccGggGCGggucgaggUCCCc -3'
miRNA:   3'- aCGAGCgUCGU---UAGcaCuuCGC--------AGGG- -5'
31008 5' -53.6 NC_006560.1 + 118029 0.66 0.957904
Target:  5'- -cCUgGCGGCGGggcUCGgcgGggGCGggCCCg -3'
miRNA:   3'- acGAgCGUCGUU---AGCa--CuuCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 106233 0.66 0.957904
Target:  5'- gGCUCGC-GU--UCGUGGAGaccgCCCg -3'
miRNA:   3'- aCGAGCGuCGuuAGCACUUCgca-GGG- -5'
31008 5' -53.6 NC_006560.1 + 97373 0.66 0.957904
Target:  5'- aGCagaCGCGGCGGcCGgccgGggGCGaCCCc -3'
miRNA:   3'- aCGa--GCGUCGUUaGCa---CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 145826 0.66 0.957904
Target:  5'- gGCcucgCGCGGCGGgcCG-GggGCGcCCCc -3'
miRNA:   3'- aCGa---GCGUCGUUa-GCaCuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 17241 0.66 0.957525
Target:  5'- gGCggCGCAGCAGccucgccUCGUGGAcggagcucGCGUaccacCCCg -3'
miRNA:   3'- aCGa-GCGUCGUU-------AGCACUU--------CGCA-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 5075 0.66 0.954007
Target:  5'- aGCUCGUcGCcggCGUGcGGCGcgccgCCCg -3'
miRNA:   3'- aCGAGCGuCGuuaGCACuUCGCa----GGG- -5'
31008 5' -53.6 NC_006560.1 + 70826 0.66 0.949874
Target:  5'- cGC-CGCGGCGGUCcG-GGAG-GUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUAG-CaCUUCgCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 136090 0.66 0.949874
Target:  5'- gGCUgGCGGCGuucaCGcacGggGCGcUCCCc -3'
miRNA:   3'- aCGAgCGUCGUua--GCa--CuuCGC-AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.