miRNA display CGI


Results 1 - 20 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 146558 0.66 0.713571
Target:  5'- gGcCCGCUuGGGUCCCcgcgagccggagGCgCCCC-CGGCg -3'
miRNA:   3'- gC-GGCGGuUUCAGGG------------CG-GGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 111491 0.66 0.713571
Target:  5'- aCGCgGCCGuccGUggCCGUCCCC-CGGCu -3'
miRNA:   3'- -GCGgCGGUuu-CAg-GGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 66128 0.66 0.713571
Target:  5'- -cCCGCuCGAGGgccgacUCCaGCCCCCgCGGCg -3'
miRNA:   3'- gcGGCG-GUUUC------AGGgCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 59313 0.66 0.713571
Target:  5'- aGUCGUCGGAGUCCaCGUcggaCUCC-CGGCc -3'
miRNA:   3'- gCGGCGGUUUCAGG-GCG----GGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 45056 0.66 0.713571
Target:  5'- uGUCGuUCGuccUCCCGUCCCC-CGGCg -3'
miRNA:   3'- gCGGC-GGUuucAGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 75281 0.66 0.713571
Target:  5'- uGCaCGCCGAGGgCUCGaccggggaCCCCUCcccgAGCg -3'
miRNA:   3'- gCG-GCGGUUUCaGGGCg-------GGGGAG----UCG- -5'
31009 5' -61.2 NC_006560.1 + 51769 0.66 0.713571
Target:  5'- gGCCGgUGGccUCgCGCCCCC-CGGCg -3'
miRNA:   3'- gCGGCgGUUucAGgGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 137920 0.66 0.710686
Target:  5'- aCGUCGUCGGAGuUUCUGCgcaugaaccucaacCCCCUCcGCg -3'
miRNA:   3'- -GCGGCGGUUUC-AGGGCG--------------GGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 55872 0.66 0.703931
Target:  5'- gGCC-CCGAAGggCUCGCCUCC--AGCa -3'
miRNA:   3'- gCGGcGGUUUCa-GGGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 35002 0.66 0.703931
Target:  5'- gGCCGCgGGccGG-CCgggCGCCCCCUcCGGUc -3'
miRNA:   3'- gCGGCGgUU--UCaGG---GCGGGGGA-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 64256 0.66 0.703931
Target:  5'- uCGCgGCCGAAGacgaCCCGCCCggcgagguCCg-AGCg -3'
miRNA:   3'- -GCGgCGGUUUCa---GGGCGGG--------GGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 87581 0.66 0.703931
Target:  5'- gCGCC-CCGAGGUCCUGgacgaaCgCCUCGGg -3'
miRNA:   3'- -GCGGcGGUUUCAGGGCg-----GgGGAGUCg -5'
31009 5' -61.2 NC_006560.1 + 110245 0.66 0.703931
Target:  5'- gCGaCCGCCucccgCUgGCCCCCUCgaccuucugGGCg -3'
miRNA:   3'- -GC-GGCGGuuucaGGgCGGGGGAG---------UCG- -5'
31009 5' -61.2 NC_006560.1 + 135395 0.66 0.703931
Target:  5'- gGCCGCgGGGGUgUCGCUcggccaugaccaCCgUCGGCg -3'
miRNA:   3'- gCGGCGgUUUCAgGGCGG------------GGgAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 135640 0.66 0.703931
Target:  5'- aCGCCgGCCGA---CCUGCCCCUgCGGg -3'
miRNA:   3'- -GCGG-CGGUUucaGGGCGGGGGaGUCg -5'
31009 5' -61.2 NC_006560.1 + 144543 0.66 0.703931
Target:  5'- gGCCGCCuuccccgcGGGcCCCuUCCCCUCgccGGCc -3'
miRNA:   3'- gCGGCGGu-------UUCaGGGcGGGGGAG---UCG- -5'
31009 5' -61.2 NC_006560.1 + 149887 0.66 0.703931
Target:  5'- gGCCGCgGAAGggcCCCGCgCgCCgaaggaaCGGCg -3'
miRNA:   3'- gCGGCGgUUUCa--GGGCGgG-GGa------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 25045 0.66 0.703931
Target:  5'- gCGCCGCCGA---CUCGCCCgCgcgcgaGGCg -3'
miRNA:   3'- -GCGGCGGUUucaGGGCGGGgGag----UCG- -5'
31009 5' -61.2 NC_006560.1 + 79187 0.66 0.703931
Target:  5'- -cCCGCCccGG-CCCGCa-CCUCGGCc -3'
miRNA:   3'- gcGGCGGuuUCaGGGCGggGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 107465 0.66 0.703931
Target:  5'- cCGUCGgcCCGGGGgcgCUCGCCgCCUCcGCg -3'
miRNA:   3'- -GCGGC--GGUUUCa--GGGCGGgGGAGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.