miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 84783 0.66 0.686285
Target:  5'- aCCGcGCCuuucuGGCCUCGCuGGCugugcuGGCGg- -3'
miRNA:   3'- -GGCuUGG-----UCGGGGCGuCCGu-----CCGCag -5'
31010 5' -61.6 NC_006560.1 + 26612 0.66 0.686285
Target:  5'- -aGGACCcGCgCCGCGGGgGGGgGg- -3'
miRNA:   3'- ggCUUGGuCGgGGCGUCCgUCCgCag -5'
31010 5' -61.6 NC_006560.1 + 84678 0.66 0.686285
Target:  5'- -gGGGCUgcuGCCCCGCcugcGGcGCGGGCGa- -3'
miRNA:   3'- ggCUUGGu--CGGGGCG----UC-CGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 1201 0.66 0.686285
Target:  5'- uCCGGACCccaGGCucCCCGgGGGCGGGg--- -3'
miRNA:   3'- -GGCUUGG---UCG--GGGCgUCCGUCCgcag -5'
31010 5' -61.6 NC_006560.1 + 15288 0.66 0.686285
Target:  5'- -gGAGCCGGCgCgGCGGcGguGGCcUCg -3'
miRNA:   3'- ggCUUGGUCGgGgCGUC-CguCCGcAG- -5'
31010 5' -61.6 NC_006560.1 + 19974 0.66 0.686285
Target:  5'- uUGAugCuGCgCCGCAGGUAcGGCagGUCc -3'
miRNA:   3'- gGCUugGuCGgGGCGUCCGU-CCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 44916 0.66 0.686285
Target:  5'- gCGAACCccGCCCCG-AGGCAacGGCc-- -3'
miRNA:   3'- gGCUUGGu-CGGGGCgUCCGU--CCGcag -5'
31010 5' -61.6 NC_006560.1 + 58293 0.66 0.686285
Target:  5'- uCCGG---GGCCUucuUGCGGGCGGGCG-Cg -3'
miRNA:   3'- -GGCUuggUCGGG---GCGUCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 149750 0.66 0.686285
Target:  5'- aCGAccACCGacCCCCGgGGcGCggGGGCGUCg -3'
miRNA:   3'- gGCU--UGGUc-GGGGCgUC-CG--UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 46088 0.66 0.686285
Target:  5'- cCCGAGgCGGCgCCGCccGCGGGgG-Ca -3'
miRNA:   3'- -GGCUUgGUCGgGGCGucCGUCCgCaG- -5'
31010 5' -61.6 NC_006560.1 + 112981 0.66 0.686285
Target:  5'- aCCGGgacuGCCGGgUgaaCGCGGGCGGGCa-- -3'
miRNA:   3'- -GGCU----UGGUCgGg--GCGUCCGUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 11723 0.66 0.685309
Target:  5'- aCGucGGCCGGCCCCaggcgcggggcccGCA-GCGGcGCGUCc -3'
miRNA:   3'- gGC--UUGGUCGGGG-------------CGUcCGUC-CGCAG- -5'
31010 5' -61.6 NC_006560.1 + 143005 0.66 0.685309
Target:  5'- -aGAGCCAccgagacGCCCgGCGGGaCAGGUa-- -3'
miRNA:   3'- ggCUUGGU-------CGGGgCGUCC-GUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 77206 0.66 0.676512
Target:  5'- gCCGGACCugcggaugguGCgCUGCcgGGGCgAGGCGUa -3'
miRNA:   3'- -GGCUUGGu---------CGgGGCG--UCCG-UCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 54845 0.66 0.676512
Target:  5'- gCGAgcaGCCAcGCCgCCGCcGGgAGGCGcCc -3'
miRNA:   3'- gGCU---UGGU-CGG-GGCGuCCgUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 142750 0.66 0.676512
Target:  5'- cCCGGcGCCcgGGCCCCGgGGGCgcgGGaGCGg- -3'
miRNA:   3'- -GGCU-UGG--UCGGGGCgUCCG---UC-CGCag -5'
31010 5' -61.6 NC_006560.1 + 119524 0.66 0.676512
Target:  5'- gCgGGGCCGcgcgcuaagcgcGCCCCGCGGGacccccauggcCGGGCG-Cg -3'
miRNA:   3'- -GgCUUGGU------------CGGGGCGUCC-----------GUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 112262 0.66 0.676512
Target:  5'- gCCGGcucgcccacgGCC-GCCuCCGCuGGguGGCGg- -3'
miRNA:   3'- -GGCU----------UGGuCGG-GGCGuCCguCCGCag -5'
31010 5' -61.6 NC_006560.1 + 103351 0.66 0.676512
Target:  5'- aCGAGCUucacggAGUCCCGCAGcugacuCAGGCccGUCg -3'
miRNA:   3'- gGCUUGG------UCGGGGCGUCc-----GUCCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 99433 0.66 0.676512
Target:  5'- cCCG-ACCAGCgCCGCGauGGUuucguucgccccGGGCGcCg -3'
miRNA:   3'- -GGCuUGGUCGgGGCGU--CCG------------UCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.