miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31011 3' -63.9 NC_006560.1 + 1907 0.66 0.622179
Target:  5'- -cGGCUaccaguccucggCGGCCGCCGgcUCGCCGuccGGGUc -3'
miRNA:   3'- ccCUGA------------GCCGGCGGC--AGCGGC---UCCGc -5'
31011 3' -63.9 NC_006560.1 + 32621 0.66 0.622179
Target:  5'- aGGGGCUCGGgaggcccggccCCGCCcaggggagGagGCCGcccGGCGg -3'
miRNA:   3'- -CCCUGAGCC-----------GGCGG--------CagCGGCu--CCGC- -5'
31011 3' -63.9 NC_006560.1 + 15211 0.66 0.622179
Target:  5'- cGGGACUCGuucCCGCCc-CGCCGGucccauccgcGGCc -3'
miRNA:   3'- -CCCUGAGCc--GGCGGcaGCGGCU----------CCGc -5'
31011 3' -63.9 NC_006560.1 + 15471 0.66 0.622179
Target:  5'- aGGGGCUCguccuccugGGUCGgCGacgCGCuCGGGGCc -3'
miRNA:   3'- -CCCUGAG---------CCGGCgGCa--GCG-GCUCCGc -5'
31011 3' -63.9 NC_006560.1 + 23172 0.66 0.622179
Target:  5'- uGGGCUacgccaUGGCCGCCGggCGCUucGGCn -3'
miRNA:   3'- cCCUGA------GCCGGCGGCa-GCGGcuCCGc -5'
31011 3' -63.9 NC_006560.1 + 51862 0.66 0.622179
Target:  5'- uGGGGCgCGGCgCGuCCG-CGCUcGGGCc -3'
miRNA:   3'- -CCCUGaGCCG-GC-GGCaGCGGcUCCGc -5'
31011 3' -63.9 NC_006560.1 + 55071 0.66 0.622179
Target:  5'- cGGGGCccCGGgguCCGCUuuuGUgCgGCCGGGGCGg -3'
miRNA:   3'- -CCCUGa-GCC---GGCGG---CA-G-CGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 75943 0.66 0.622179
Target:  5'- uGGGGCUCugcgaccGCCugGCCG-CGCUGAGGg- -3'
miRNA:   3'- -CCCUGAGc------CGG--CGGCaGCGGCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 76009 0.66 0.622179
Target:  5'- uGGACcUGGCCGCgGcCGCgGAG-CGg -3'
miRNA:   3'- cCCUGaGCCGGCGgCaGCGgCUCcGC- -5'
31011 3' -63.9 NC_006560.1 + 94748 0.66 0.622179
Target:  5'- uGGcGCuguUCGGCCGCCGg-GCCGAG-Ca -3'
miRNA:   3'- -CCcUG---AGCCGGCGGCagCGGCUCcGc -5'
31011 3' -63.9 NC_006560.1 + 95318 0.66 0.622179
Target:  5'- gGGGACggucgUGGacaaccgCGCCG-CGCCGGGGg- -3'
miRNA:   3'- -CCCUGa----GCCg------GCGGCaGCGGCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 98329 0.66 0.622179
Target:  5'- cGGGGCUggCGGCCGCCuucuUCGCCuuccGCu -3'
miRNA:   3'- -CCCUGA--GCCGGCGGc---AGCGGcuc-CGc -5'
31011 3' -63.9 NC_006560.1 + 117704 0.66 0.622179
Target:  5'- gGGGAgguaCUgGcGCCuGCgGUC-CCGGGGCGg -3'
miRNA:   3'- -CCCU----GAgC-CGG-CGgCAGcGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 147295 0.66 0.622179
Target:  5'- gGGGGCUCuGGCgggCGCCGg-GCgGaAGGUGg -3'
miRNA:   3'- -CCCUGAG-CCG---GCGGCagCGgC-UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 102396 0.66 0.621222
Target:  5'- cGGGAggccCUCGGCgGCC-UCgggcgcgGCCGcGGCGu -3'
miRNA:   3'- -CCCU----GAGCCGgCGGcAG-------CGGCuCCGC- -5'
31011 3' -63.9 NC_006560.1 + 133187 0.66 0.619309
Target:  5'- aGGGcguccGCggGGCCGCCGUCcagagcgaaccgcaGCCGGcgguccGGCGu -3'
miRNA:   3'- -CCC-----UGagCCGGCGGCAG--------------CGGCU------CCGC- -5'
31011 3' -63.9 NC_006560.1 + 139044 0.66 0.612616
Target:  5'- gGGGGCUcgcgguguccCGGCCcguGCCGg-GCCcgGGGGCGc -3'
miRNA:   3'- -CCCUGA----------GCCGG---CGGCagCGG--CUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 99846 0.66 0.612616
Target:  5'- cGGGAUccagaGGUagcucCCGUCGCCGGGGgGc -3'
miRNA:   3'- -CCCUGag---CCGgc---GGCAGCGGCUCCgC- -5'
31011 3' -63.9 NC_006560.1 + 92727 0.66 0.612616
Target:  5'- --aGCUgCGcGCCaUCGUCGCCGAGGgGg -3'
miRNA:   3'- cccUGA-GC-CGGcGGCAGCGGCUCCgC- -5'
31011 3' -63.9 NC_006560.1 + 29167 0.66 0.612616
Target:  5'- gGGGACaccaUCGGCaccccaGCCaGUCGCCGucGGa- -3'
miRNA:   3'- -CCCUG----AGCCGg-----CGG-CAGCGGCu-CCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.