miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31012 3' -64.4 NC_006560.1 + 122771 0.65 0.581593
Target:  5'- uCGagGUCCcCGgGGCCCggagcuucggcgggUCCGGGGGg -3'
miRNA:   3'- cGCggUAGGcGCgCCGGG--------------AGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 101950 0.66 0.57874
Target:  5'- cGCGCCAgggUCGCgagguagcggggcagGCgcuccagcaGGCCCgcgaaggagCCGGGGGg -3'
miRNA:   3'- -CGCGGUa--GGCG---------------CG---------CCGGGa--------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 35363 0.66 0.57494
Target:  5'- gGCGCg---CGCGgGGCCCggcugcgccaCAGGGGg -3'
miRNA:   3'- -CGCGguagGCGCgCCGGGag--------GUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 3906 0.66 0.57494
Target:  5'- gGCGgCGUCgGCGUccCCCUCCuccgccgcGGGGGc -3'
miRNA:   3'- -CGCgGUAGgCGCGccGGGAGG--------UCCCC- -5'
31012 3' -64.4 NC_006560.1 + 34992 0.66 0.57494
Target:  5'- nGCGCCucggggCCGCG-GGCCggCCGGGc- -3'
miRNA:   3'- -CGCGGua----GGCGCgCCGGgaGGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 91993 0.66 0.57494
Target:  5'- cGUGgaCAUCCuGCGCgGGCCCgCCGGGu- -3'
miRNA:   3'- -CGCg-GUAGG-CGCG-CCGGGaGGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 3125 0.66 0.57494
Target:  5'- cGCGCgggucgaaCAUgaGCGCGGCgCgCCAGGGc -3'
miRNA:   3'- -CGCG--------GUAggCGCGCCGgGaGGUCCCc -5'
31012 3' -64.4 NC_006560.1 + 25227 0.66 0.57494
Target:  5'- cGCGCCuUCUGCGCGcgcgcccuGCCCgagCCGGa-- -3'
miRNA:   3'- -CGCGGuAGGCGCGC--------CGGGa--GGUCccc -5'
31012 3' -64.4 NC_006560.1 + 44298 0.66 0.573991
Target:  5'- aCGCCucaCCGCGCgauggccGGUCUUCUcGGGGc -3'
miRNA:   3'- cGCGGua-GGCGCG-------CCGGGAGGuCCCC- -5'
31012 3' -64.4 NC_006560.1 + 3942 0.66 0.573991
Target:  5'- gGCGCCgcgGUCgGCggcgaggGCGGCCg-CCAGGcGGc -3'
miRNA:   3'- -CGCGG---UAGgCG-------CGCCGGgaGGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 111206 0.66 0.573042
Target:  5'- cGgGCCAUCCaGCaGCuGGCCCgcaacgugcaggCCGugcuGGGGg -3'
miRNA:   3'- -CgCGGUAGG-CG-CG-CCGGGa-----------GGU----CCCC- -5'
31012 3' -64.4 NC_006560.1 + 71075 0.66 0.572094
Target:  5'- cGCGCC-UCgGCGCuccGGCCCUuccCCGGcccggaccccccccGGGa -3'
miRNA:   3'- -CGCGGuAGgCGCG---CCGGGA---GGUC--------------CCC- -5'
31012 3' -64.4 NC_006560.1 + 26009 0.66 0.569251
Target:  5'- gGCGCCGUgcgggCCGCGggggacccgcgcgcaCGGuCCCgucgggcgcCCGGGGGc -3'
miRNA:   3'- -CGCGGUA-----GGCGC---------------GCC-GGGa--------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 18615 0.66 0.568304
Target:  5'- cGCGUCGg-CGCGCGGCUCgucgccguucgcgUCCccgacgcgugggcggAGGGGg -3'
miRNA:   3'- -CGCGGUagGCGCGCCGGG-------------AGG---------------UCCCC- -5'
31012 3' -64.4 NC_006560.1 + 130524 0.66 0.565466
Target:  5'- -gGCCGguggcgCCGCGCGGCgCCgcgCUGGGcguGGa -3'
miRNA:   3'- cgCGGUa-----GGCGCGCCG-GGa--GGUCC---CC- -5'
31012 3' -64.4 NC_006560.1 + 130973 0.66 0.565466
Target:  5'- uCGCCuUCC-UGgGGCCCgaguucgagccCCGGGGGg -3'
miRNA:   3'- cGCGGuAGGcGCgCCGGGa----------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 188 0.66 0.565466
Target:  5'- cCGCCGgcguuuuuuUCCGCGCGcGCgCCgCCGcGGGa -3'
miRNA:   3'- cGCGGU---------AGGCGCGC-CG-GGaGGUcCCC- -5'
31012 3' -64.4 NC_006560.1 + 21608 0.66 0.565466
Target:  5'- cGCGCC-UgCGCGCGGCgCCgCCGGc-- -3'
miRNA:   3'- -CGCGGuAgGCGCGCCG-GGaGGUCccc -5'
31012 3' -64.4 NC_006560.1 + 100262 0.66 0.565466
Target:  5'- gGCGCaggAUCuCGCGCGaGUCUgccgCCAGGuGGc -3'
miRNA:   3'- -CGCGg--UAG-GCGCGC-CGGGa---GGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 105572 0.66 0.565466
Target:  5'- cCGCCccCC-CGUGGauCCCUCgGGGGGc -3'
miRNA:   3'- cGCGGuaGGcGCGCC--GGGAGgUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.