miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 5' -55 NC_006560.1 + 10540 0.65 0.956799
Target:  5'- gGGGcGCCGACGcacugggcgucGAcGACGGUCUccagcaccugccCGGGGg -3'
miRNA:   3'- gCCC-CGGCUGU-----------CU-UUGUCAGA------------GCUCC- -5'
31013 5' -55 NC_006560.1 + 117300 0.65 0.956799
Target:  5'- gGGGGCaGACAGAGAaGGgcgCg-GAGGg -3'
miRNA:   3'- gCCCCGgCUGUCUUUgUCa--GagCUCC- -5'
31013 5' -55 NC_006560.1 + 35553 0.66 0.952937
Target:  5'- gGGGGCCGGCAauuagcgcGGAGgAGcgCUCGGc- -3'
miRNA:   3'- gCCCCGGCUGU--------CUUUgUCa-GAGCUcc -5'
31013 5' -55 NC_006560.1 + 32674 0.66 0.952937
Target:  5'- aCGGGGUCGGCccAGAGGgcCGGggcCGGGGg -3'
miRNA:   3'- -GCCCCGGCUG--UCUUU--GUCagaGCUCC- -5'
31013 5' -55 NC_006560.1 + 64816 0.66 0.952937
Target:  5'- gCGGGcacaCCGACAGAAGUAGU--UGAGGa -3'
miRNA:   3'- -GCCCc---GGCUGUCUUUGUCAgaGCUCC- -5'
31013 5' -55 NC_006560.1 + 6486 0.66 0.952937
Target:  5'- cCGGGaacgccgcGCCGACGGAAccucgcaggugaGCGGUCguccCGGGa -3'
miRNA:   3'- -GCCC--------CGGCUGUCUU------------UGUCAGa---GCUCc -5'
31013 5' -55 NC_006560.1 + 51729 0.66 0.952937
Target:  5'- -uGGGCCGACGcgcGGGCGGcCUCGcGGc -3'
miRNA:   3'- gcCCCGGCUGUc--UUUGUCaGAGCuCC- -5'
31013 5' -55 NC_006560.1 + 27270 0.66 0.952937
Target:  5'- cCGGccgcGGCCG-CGGggGCGGggcgCGGGGc -3'
miRNA:   3'- -GCC----CCGGCuGUCuuUGUCaga-GCUCC- -5'
31013 5' -55 NC_006560.1 + 14210 0.66 0.94885
Target:  5'- gGGuGGUCgGGCGGGGcgcccGCGGUCgCGGGGa -3'
miRNA:   3'- gCC-CCGG-CUGUCUU-----UGUCAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 32105 0.66 0.94885
Target:  5'- uGGGG-CGGCAGGcggGGCAG-CgagCGGGGc -3'
miRNA:   3'- gCCCCgGCUGUCU---UUGUCaGa--GCUCC- -5'
31013 5' -55 NC_006560.1 + 2856 0.66 0.94885
Target:  5'- -cGGGCCcGCAGAGGCGGUUggccagCGcGGc -3'
miRNA:   3'- gcCCCGGcUGUCUUUGUCAGa-----GCuCC- -5'
31013 5' -55 NC_006560.1 + 26484 0.66 0.94885
Target:  5'- cCGGcGGCCccGGCgGGggGCGGgcgCgCGAGGg -3'
miRNA:   3'- -GCC-CCGG--CUG-UCuuUGUCa--GaGCUCC- -5'
31013 5' -55 NC_006560.1 + 93874 0.66 0.944533
Target:  5'- cCGGGGCUGGCGGc-GCAGgCcCGGGc -3'
miRNA:   3'- -GCCCCGGCUGUCuuUGUCaGaGCUCc -5'
31013 5' -55 NC_006560.1 + 149995 0.66 0.941833
Target:  5'- cCGGGGCCGcgcucgggaccGCGGGcggcgcaccccgaccGACGG-CgggCGAGGa -3'
miRNA:   3'- -GCCCCGGC-----------UGUCU---------------UUGUCaGa--GCUCC- -5'
31013 5' -55 NC_006560.1 + 32984 0.66 0.939985
Target:  5'- gGGGGUgGGCGGGAA-GGcCggCGAGGg -3'
miRNA:   3'- gCCCCGgCUGUCUUUgUCaGa-GCUCC- -5'
31013 5' -55 NC_006560.1 + 33014 0.66 0.939985
Target:  5'- gGGGGUgGGCGGGAA-GGcCggCGAGGg -3'
miRNA:   3'- gCCCCGgCUGUCUUUgUCaGa-GCUCC- -5'
31013 5' -55 NC_006560.1 + 38706 0.66 0.939985
Target:  5'- -aGGGCCGcagcCGGGugcuCAGguUCUCGAGGa -3'
miRNA:   3'- gcCCCGGCu---GUCUuu--GUC--AGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 147021 0.66 0.939985
Target:  5'- cCGGGGCC-ACGGGgggccccgaGACGG-C-CGGGGg -3'
miRNA:   3'- -GCCCCGGcUGUCU---------UUGUCaGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 15285 0.66 0.935204
Target:  5'- gCGGGaGCCGGCgcGGcgGCGGUggcCUCGGGc -3'
miRNA:   3'- -GCCC-CGGCUG--UCuuUGUCA---GAGCUCc -5'
31013 5' -55 NC_006560.1 + 114842 0.66 0.935204
Target:  5'- gGGGGCUGGCgcuguagcggggAGggGCGGagaCgcgCGGGGg -3'
miRNA:   3'- gCCCCGGCUG------------UCuuUGUCa--Ga--GCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.