miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 3' -68.3 NC_006560.1 + 24358 0.66 0.416873
Target:  5'- cGCCgCGCCgCCGCCUggaugcgccaGgUCCCcgagCCCGa -3'
miRNA:   3'- -CGGgGUGGgGGCGGG----------CgAGGGa---GGGC- -5'
31014 3' -68.3 NC_006560.1 + 21865 0.66 0.416873
Target:  5'- cGCCgCCgACCCUCGCcgcgaccgCCGCcgaCCCUCgCCGc -3'
miRNA:   3'- -CGG-GG-UGGGGGCG--------GGCGa--GGGAG-GGC- -5'
31014 3' -68.3 NC_006560.1 + 28908 0.66 0.416873
Target:  5'- uGCUCUccucgggggGCCggCCCGCCCGCcCCCUcaacauggcgCCCGu -3'
miRNA:   3'- -CGGGG---------UGG--GGGCGGGCGaGGGA----------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 39541 0.66 0.416873
Target:  5'- gGCCCCucgACCUCCgagcGCCgGCgccgCCUCCCu -3'
miRNA:   3'- -CGGGG---UGGGGG----CGGgCGag--GGAGGGc -5'
31014 3' -68.3 NC_006560.1 + 72336 0.66 0.416873
Target:  5'- nGCCgCGCCUCCGUCggggguguggggCGCggCCCUCgCGg -3'
miRNA:   3'- -CGGgGUGGGGGCGG------------GCGa-GGGAGgGC- -5'
31014 3' -68.3 NC_006560.1 + 22108 0.66 0.416873
Target:  5'- aCCUCGCCgCCGCcgCCGCgUCCUCgCGg -3'
miRNA:   3'- cGGGGUGGgGGCG--GGCGaGGGAGgGC- -5'
31014 3' -68.3 NC_006560.1 + 37001 0.66 0.416873
Target:  5'- cGCCCgaCGCCgCgGCCuCGCcgggCCUCCCGa -3'
miRNA:   3'- -CGGG--GUGGgGgCGG-GCGag--GGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 73078 0.66 0.416873
Target:  5'- cGCCCUuCCCCgacgCGCCCGg--CCUCCUGc -3'
miRNA:   3'- -CGGGGuGGGG----GCGGGCgagGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 22591 0.66 0.416873
Target:  5'- aCCCCGaCCCCGaCUCGgaCCCggacCCCGc -3'
miRNA:   3'- cGGGGUgGGGGC-GGGCgaGGGa---GGGC- -5'
31014 3' -68.3 NC_006560.1 + 125073 0.66 0.416873
Target:  5'- gGCCUU-CCUCCGCUCGaucgCCCggCCCGg -3'
miRNA:   3'- -CGGGGuGGGGGCGGGCga--GGGa-GGGC- -5'
31014 3' -68.3 NC_006560.1 + 41878 0.66 0.416072
Target:  5'- aGUCCCGcacguacCCCCCGaCCGcCUCCacgaagUCCCGu -3'
miRNA:   3'- -CGGGGU-------GGGGGCgGGC-GAGGg-----AGGGC- -5'
31014 3' -68.3 NC_006560.1 + 88371 0.66 0.414472
Target:  5'- cGCCaggCACCCCCGCCgUGCUgcgcgugcucgacgUUCUCCaCGa -3'
miRNA:   3'- -CGGg--GUGGGGGCGG-GCGA--------------GGGAGG-GC- -5'
31014 3' -68.3 NC_006560.1 + 762 0.66 0.408903
Target:  5'- nCCCC-CCCCCGCggCGCgggUCCUUUCUGg -3'
miRNA:   3'- cGGGGuGGGGGCGg-GCG---AGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 142513 0.66 0.408903
Target:  5'- gGCCCCggcGCCCCCGgggcggggcCCCGggCCCggcggCCgGg -3'
miRNA:   3'- -CGGGG---UGGGGGC---------GGGCgaGGGa----GGgC- -5'
31014 3' -68.3 NC_006560.1 + 80067 0.66 0.408903
Target:  5'- gGUCggaCGCCCCC-CUCGCUCCCaccaCCGa -3'
miRNA:   3'- -CGGg--GUGGGGGcGGGCGAGGGag--GGC- -5'
31014 3' -68.3 NC_006560.1 + 74814 0.66 0.408903
Target:  5'- uCCCCGCggcgCCCGagaCGC-CCCUCCUGg -3'
miRNA:   3'- cGGGGUGg---GGGCgg-GCGaGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 145259 0.66 0.401028
Target:  5'- gGCCCCgugggggaGCCCCgGCCCcCcggCCC-CCUGg -3'
miRNA:   3'- -CGGGG--------UGGGGgCGGGcGa--GGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 31656 0.66 0.401028
Target:  5'- cGCCCCcgggugcgugUCCCCGCCCGaguaCCCgggagacCCCGc -3'
miRNA:   3'- -CGGGGu---------GGGGGCGGGCga--GGGa------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 59557 0.66 0.401028
Target:  5'- cGCCuCCGgCCCgGCagGCcacaCCCUCCCGu -3'
miRNA:   3'- -CGG-GGUgGGGgCGggCGa---GGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 63055 0.66 0.401028
Target:  5'- cGCCCUcguaccggggGCgCgCGCCCGggaagCCCUCCCa -3'
miRNA:   3'- -CGGGG----------UGgGgGCGGGCga---GGGAGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.