miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 5' -55.5 NC_006560.1 + 78253 0.66 0.938465
Target:  5'- gGCCGGGcccccGACccgcaGGGCGGGcgCGAGg- -3'
miRNA:   3'- -CGGUCCua---CUG-----CCUGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 33113 0.66 0.938465
Target:  5'- cGCgGGGAaGGCGGccGCGGGgaaggCGGGg- -3'
miRNA:   3'- -CGgUCCUaCUGCC--UGCCCaa---GCUCag -5'
31014 5' -55.5 NC_006560.1 + 4911 0.66 0.938465
Target:  5'- cGCuCGGGGUc-CGGGucCGGGUcCGAGUCc -3'
miRNA:   3'- -CG-GUCCUAcuGCCU--GCCCAaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 4822 0.66 0.938465
Target:  5'- aGCCcGGGUc-CGGGuCGGGgucCGAGUCg -3'
miRNA:   3'- -CGGuCCUAcuGCCU-GCCCaa-GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 58293 0.66 0.933601
Target:  5'- uCCGGGGccuucuUG-CGGGCGGGcgCGucGGUCg -3'
miRNA:   3'- cGGUCCU------ACuGCCUGCCCaaGC--UCAG- -5'
31014 5' -55.5 NC_006560.1 + 17109 0.66 0.9285
Target:  5'- gGCuCAGGG-GGCGGgaGCGGGcgCGGGa- -3'
miRNA:   3'- -CG-GUCCUaCUGCC--UGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 54381 0.66 0.9285
Target:  5'- aCCGGGggGaaacgcGCGGGCGGGggcgCGGGa- -3'
miRNA:   3'- cGGUCCuaC------UGCCUGCCCaa--GCUCag -5'
31014 5' -55.5 NC_006560.1 + 47810 0.66 0.9285
Target:  5'- cGCCcucggGGGAgggGAgGGACGGGUggaugggggCGGGg- -3'
miRNA:   3'- -CGG-----UCCUa--CUgCCUGCCCAa--------GCUCag -5'
31014 5' -55.5 NC_006560.1 + 32071 0.66 0.923163
Target:  5'- gGgCAGGGgccgcagGGCGGGCGGGggCGgcaGGUg -3'
miRNA:   3'- -CgGUCCUa------CUGCCUGCCCaaGC---UCAg -5'
31014 5' -55.5 NC_006560.1 + 32398 0.66 0.923163
Target:  5'- cGCgGGGGcgGAgGGugGGGgcCGAGg- -3'
miRNA:   3'- -CGgUCCUa-CUgCCugCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 2919 0.66 0.923163
Target:  5'- uCCAGGcgGGCgGGGCGGGg--GAGa- -3'
miRNA:   3'- cGGUCCuaCUG-CCUGCCCaagCUCag -5'
31014 5' -55.5 NC_006560.1 + 11960 0.66 0.923163
Target:  5'- uCCAGGGUcagguuggcuaGGCGGGgcucUGGGUccugCGGGUCg -3'
miRNA:   3'- cGGUCCUA-----------CUGCCU----GCCCAa---GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 60651 0.66 0.923163
Target:  5'- cCCGGGGcaGACGcGCGGGggCGAGg- -3'
miRNA:   3'- cGGUCCUa-CUGCcUGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 149907 0.66 0.923163
Target:  5'- cGCCgaAGGAacGGCGGcCGGGcgCGGcGUCg -3'
miRNA:   3'- -CGG--UCCUa-CUGCCuGCCCaaGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 3736 0.66 0.91759
Target:  5'- aGCCAGGcgcGCGGGCGcGGcgCGGG-Cg -3'
miRNA:   3'- -CGGUCCuacUGCCUGC-CCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 6537 0.66 0.91759
Target:  5'- cGCCucGGGGgcucgGGgGGACGGGggcUCGGGg- -3'
miRNA:   3'- -CGG--UCCUa----CUgCCUGCCCa--AGCUCag -5'
31014 5' -55.5 NC_006560.1 + 61521 0.66 0.91759
Target:  5'- gGCuCAGGggGAagcuggGGGCGGGggCGGGg- -3'
miRNA:   3'- -CG-GUCCuaCUg-----CCUGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 148773 0.66 0.91759
Target:  5'- cGCCAuguuGGAgggGGCGGGCGGGccggcccccCGAGg- -3'
miRNA:   3'- -CGGU----CCUa--CUGCCUGCCCaa-------GCUCag -5'
31014 5' -55.5 NC_006560.1 + 26956 0.67 0.914133
Target:  5'- gGCCGGGGaaccccacaggcggGGCGGGgGGGggCGGG-Cg -3'
miRNA:   3'- -CGGUCCUa-------------CUGCCUgCCCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 108504 0.67 0.911781
Target:  5'- cGCCGGGGggagGGCGGccggcgGCGGGccCGGGg- -3'
miRNA:   3'- -CGGUCCUa---CUGCC------UGCCCaaGCUCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.