miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 5' -64.3 NC_006560.1 + 78075 0.66 0.549672
Target:  5'- cGGCGcGGCCgcgGCGCUCgGGGGccucgaCGGCc -3'
miRNA:   3'- -CUGC-CCGGa--CGUGGGgCCCUa-----GCCGa -5'
31016 5' -64.3 NC_006560.1 + 136 0.66 0.549672
Target:  5'- gGGCgGGGCCgGCcccGCCCCGcGGuccCGGCc -3'
miRNA:   3'- -CUG-CCCGGaCG---UGGGGC-CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 39349 0.66 0.549672
Target:  5'- -uCGcGCCUGCGCCCCcGGcccCGGCg -3'
miRNA:   3'- cuGCcCGGACGUGGGGcCCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 45799 0.66 0.549672
Target:  5'- --gGGGCCUuuugGC-CCCCGGGG-CGGa- -3'
miRNA:   3'- cugCCCGGA----CGuGGGGCCCUaGCCga -5'
31016 5' -64.3 NC_006560.1 + 148452 0.66 0.549672
Target:  5'- gGGCGGGCCgacgGUcgUCUGGGG-CGGCg -3'
miRNA:   3'- -CUGCCCGGa---CGugGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 150465 0.66 0.549672
Target:  5'- gGGCgGGGCCgGCcccGCCCCGcGGuccCGGCc -3'
miRNA:   3'- -CUG-CCCGGaCG---UGGGGC-CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 96252 0.66 0.5402
Target:  5'- uGCGGGaagaCCUGCgggagaucaaGgCCCGGGA-CGGCg -3'
miRNA:   3'- cUGCCC----GGACG----------UgGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 70450 0.66 0.5402
Target:  5'- uGGCGGGCCUGCGggCCGcGAUCGcCg -3'
miRNA:   3'- -CUGCCCGGACGUggGGCcCUAGCcGa -5'
31016 5' -64.3 NC_006560.1 + 57256 0.66 0.5402
Target:  5'- cGCGGGg--GgGCCUCGGGGUcCGGCg -3'
miRNA:   3'- cUGCCCggaCgUGGGGCCCUA-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 21914 0.66 0.5402
Target:  5'- -uCGGaGCCccgGCGCCCCcGGG-CGGCg -3'
miRNA:   3'- cuGCC-CGGa--CGUGGGGcCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 133970 0.66 0.530784
Target:  5'- --gGGGCCgcgGCGCCCCcccccGGcucgcgccccaGGUCGGCg -3'
miRNA:   3'- cugCCCGGa--CGUGGGG-----CC-----------CUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 63987 0.66 0.530784
Target:  5'- gGGCGGGCaugaUGCuggcguuCCCCGGG--CGGUc -3'
miRNA:   3'- -CUGCCCGg---ACGu------GGGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 150014 0.66 0.530784
Target:  5'- cGCGGGCggcGCACCCCGaccGA-CGGCg -3'
miRNA:   3'- cUGCCCGga-CGUGGGGCc--CUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 150407 0.66 0.52797
Target:  5'- gGGCGGGCCcuccccGCGCCCCGcgccccgcccccgcGGccgCGGCc -3'
miRNA:   3'- -CUGCCCGGa-----CGUGGGGC--------------CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 123271 0.66 0.52797
Target:  5'- cGCGGGCaguuCUGCgucgcgcagccgccGCCCCGGGGUucCGGg- -3'
miRNA:   3'- cUGCCCG----GACG--------------UGGGGCCCUA--GCCga -5'
31016 5' -64.3 NC_006560.1 + 78 0.66 0.52797
Target:  5'- gGGCGGGCCcuccccGCGCCCCGcgccccgcccccgcGGccgCGGCc -3'
miRNA:   3'- -CUGCCCGGa-----CGUGGGGC--------------CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 32850 0.66 0.521428
Target:  5'- cGGCGGGCa-GCcCCCCGGGcagaGggGGCa -3'
miRNA:   3'- -CUGCCCGgaCGuGGGGCCC----UagCCGa -5'
31016 5' -64.3 NC_006560.1 + 9966 0.66 0.521428
Target:  5'- cGGCGGGCgaGCgGCCUCGGGcagccgCGGgUg -3'
miRNA:   3'- -CUGCCCGgaCG-UGGGGCCCua----GCCgA- -5'
31016 5' -64.3 NC_006560.1 + 92419 0.66 0.521428
Target:  5'- gGACGcGGUCcacgaGCACCCCGGGGcgUGGaCg -3'
miRNA:   3'- -CUGC-CCGGa----CGUGGGGCCCUa-GCC-Ga -5'
31016 5' -64.3 NC_006560.1 + 75111 0.66 0.521428
Target:  5'- cGCGcGGCUcgGgGCCCUGGGGgccgCGGCc -3'
miRNA:   3'- cUGC-CCGGa-CgUGGGGCCCUa---GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.