miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 16270 0.66 0.916491
Target:  5'- --gGCGGCGCgcgcggagacggccgACCccugGGGCGcggcggggcGCGGGCc -3'
miRNA:   3'- guaCGUCGCGa--------------UGGa---CCUGU---------UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 130829 0.66 0.915908
Target:  5'- cCGUGaCGGCGCgcguCCUGGuGCccCGGGg -3'
miRNA:   3'- -GUAC-GUCGCGau--GGACC-UGuuGCCCg -5'
31017 3' -55.7 NC_006560.1 + 90669 0.66 0.915908
Target:  5'- --gGCGcGCGCcgccgGCCUGGugGGCGccauggucuucGGCa -3'
miRNA:   3'- guaCGU-CGCGa----UGGACCugUUGC-----------CCG- -5'
31017 3' -55.7 NC_006560.1 + 65721 0.66 0.915908
Target:  5'- --cGCAGCGUUuauuuuugGCCcguuUGGGgGGCGGGg -3'
miRNA:   3'- guaCGUCGCGA--------UGG----ACCUgUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 137197 0.66 0.915323
Target:  5'- --cGCGGCcccgccgGCgGCC-GGGgAGCGGGCg -3'
miRNA:   3'- guaCGUCG-------CGaUGGaCCUgUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 88657 0.66 0.909945
Target:  5'- --cGCAGuCGCUGCaguagCUGuGCGgcGCGGGCu -3'
miRNA:   3'- guaCGUC-GCGAUG-----GACcUGU--UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 142211 0.66 0.909945
Target:  5'- --gGCGGCGCgccaccagaGCCauuaGGGCAuCGGGUg -3'
miRNA:   3'- guaCGUCGCGa--------UGGa---CCUGUuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 97171 0.66 0.909945
Target:  5'- -cUGUcGCGCgucgACCUcgcGGACugcguCGGGCg -3'
miRNA:   3'- guACGuCGCGa---UGGA---CCUGuu---GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 85746 0.66 0.903741
Target:  5'- --gGCAgGCGCUugUUGGcguagGCGcGCGGGUg -3'
miRNA:   3'- guaCGU-CGCGAugGACC-----UGU-UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 87571 0.66 0.903741
Target:  5'- --gGCAGCccccGCgccccgagguCCUGGACGAacgccuCGGGCa -3'
miRNA:   3'- guaCGUCG----CGau--------GGACCUGUU------GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 116854 0.66 0.903741
Target:  5'- --aGCaggaAGCGCUccccggcggGCUUGGugAggACGGGCc -3'
miRNA:   3'- guaCG----UCGCGA---------UGGACCugU--UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 147277 0.66 0.903741
Target:  5'- --gGCGGcCGggGCC-GGGCGGgGGGCu -3'
miRNA:   3'- guaCGUC-GCgaUGGaCCUGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 57649 0.66 0.903741
Target:  5'- --cGCacccgGGCGCacACCcGGGCGGCGaGGCg -3'
miRNA:   3'- guaCG-----UCGCGa-UGGaCCUGUUGC-CCG- -5'
31017 3' -55.7 NC_006560.1 + 73474 0.66 0.903741
Target:  5'- --cGCGGCuguccgagugGCU-CCUGGAgCGcucGCGGGCc -3'
miRNA:   3'- guaCGUCG----------CGAuGGACCU-GU---UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 102927 0.66 0.903741
Target:  5'- --cGCGGgGg-ACCgGGGCGGCGGcGCg -3'
miRNA:   3'- guaCGUCgCgaUGGaCCUGUUGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 133549 0.66 0.903741
Target:  5'- gCcgGCGGCGCgcgGCgUGGcggacgucggcgACGAagaGGGCg -3'
miRNA:   3'- -GuaCGUCGCGa--UGgACC------------UGUUg--CCCG- -5'
31017 3' -55.7 NC_006560.1 + 58119 0.66 0.903741
Target:  5'- gGUGCGGcCGCcgagaacagggGCCcgcGGAgGAUGGGCg -3'
miRNA:   3'- gUACGUC-GCGa----------UGGa--CCUgUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 21618 0.66 0.903108
Target:  5'- --cGCGGCGCcGCCggccgcaugcuaaUGcGAUccucGACGGGCg -3'
miRNA:   3'- guaCGUCGCGaUGG-------------AC-CUG----UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 27601 0.66 0.902472
Target:  5'- gGUG-GGCGCUcgcGCCUGcugcccgagcucGCGGCGGGCg -3'
miRNA:   3'- gUACgUCGCGA---UGGACc-----------UGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3974 0.66 0.8973
Target:  5'- --gGCGGCGCUGCgCgGcGACAcgcccGCGGcGCc -3'
miRNA:   3'- guaCGUCGCGAUG-GaC-CUGU-----UGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.