miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 105857 0.66 0.482687
Target:  5'- cGCGCGCGcuacgGGCUgcgguucaUGGGCCuguCGCUGu- -3'
miRNA:   3'- -UGCGCGCa----CCGG--------GCCCGGu--GCGACca -5'
31017 5' -65.9 NC_006560.1 + 77641 0.66 0.482687
Target:  5'- gACGCGCGa-GUUCGGGUgcCGCUGGg -3'
miRNA:   3'- -UGCGCGCacCGGGCCCGguGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 27815 0.66 0.482687
Target:  5'- gGCGCGCGgGGCCCuuccgcGGCCGggggUGCcGGg -3'
miRNA:   3'- -UGCGCGCaCCGGGc-----CCGGU----GCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 3791 0.66 0.482687
Target:  5'- cGCGCGCGgccgccaGCCCGGGCacgGCgGCgaGGUc -3'
miRNA:   3'- -UGCGCGCac-----CGGGCCCGg--UG-CGa-CCA- -5'
31017 5' -65.9 NC_006560.1 + 30814 0.66 0.482687
Target:  5'- gGCG-GCccUGGCCCaGGCCcuggcccagGCGCUGGg -3'
miRNA:   3'- -UGCgCGc-ACCGGGcCCGG---------UGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 48359 0.66 0.481795
Target:  5'- gACGUG-GUGGCCUGGGgcgacgcCCACGCg--- -3'
miRNA:   3'- -UGCGCgCACCGGGCCC-------GGUGCGacca -5'
31017 5' -65.9 NC_006560.1 + 47429 0.66 0.481795
Target:  5'- aGCGCaccuucuGCGcGGCCgUGGGCCGCGUggcGGc -3'
miRNA:   3'- -UGCG-------CGCaCCGG-GCCCGGUGCGa--CCa -5'
31017 5' -65.9 NC_006560.1 + 3379 0.66 0.473798
Target:  5'- gGCGgGCGggcgGGCgCGGGCCggcucuucuugcGCGCcGGc -3'
miRNA:   3'- -UGCgCGCa---CCGgGCCCGG------------UGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 66339 0.66 0.473798
Target:  5'- gUGCGCGgccucgugggGGCcgccgcacaCCGcGGUCACGCUGGc -3'
miRNA:   3'- uGCGCGCa---------CCG---------GGC-CCGGUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 118883 0.66 0.473798
Target:  5'- gGCGUGCcuccgGGCCCuGGGCUGCGCc--- -3'
miRNA:   3'- -UGCGCGca---CCGGG-CCCGGUGCGacca -5'
31017 5' -65.9 NC_006560.1 + 44306 0.66 0.473798
Target:  5'- cCGCGCGaUGGCCggucuucuCGGGgCGCucugcgGCUGGg -3'
miRNA:   3'- uGCGCGC-ACCGG--------GCCCgGUG------CGACCa -5'
31017 5' -65.9 NC_006560.1 + 67334 0.66 0.473798
Target:  5'- gGCGCuccggagaucGCG-GGCCCGGGgCC-CGCgaaUGGg -3'
miRNA:   3'- -UGCG----------CGCaCCGGGCCC-GGuGCG---ACCa -5'
31017 5' -65.9 NC_006560.1 + 80857 0.66 0.473798
Target:  5'- uGCGCGCG-GG-CUGGGCgGCGggGGc -3'
miRNA:   3'- -UGCGCGCaCCgGGCCCGgUGCgaCCa -5'
31017 5' -65.9 NC_006560.1 + 9115 0.66 0.465868
Target:  5'- gGCGCGCGgcacgucauugcgagGGCCCGcaggucuucGGCgACGCcgaUGGg -3'
miRNA:   3'- -UGCGCGCa--------------CCGGGC---------CCGgUGCG---ACCa -5'
31017 5' -65.9 NC_006560.1 + 11739 0.66 0.464991
Target:  5'- -gGCGCGgGGCCCGcaGCgGCGCguccgGGUc -3'
miRNA:   3'- ugCGCGCaCCGGGCc-CGgUGCGa----CCA- -5'
31017 5' -65.9 NC_006560.1 + 3422 0.66 0.464991
Target:  5'- gGCGgGCGgcgGGCgCGGGCgCcCGCgGGg -3'
miRNA:   3'- -UGCgCGCa--CCGgGCCCG-GuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 146275 0.66 0.464991
Target:  5'- aGCGCGUG-GGgCCGGacGCCGCGggGGc -3'
miRNA:   3'- -UGCGCGCaCCgGGCC--CGGUGCgaCCa -5'
31017 5' -65.9 NC_006560.1 + 56012 0.66 0.45627
Target:  5'- cGCGCGCGUGaGCUCGuGCaccacgagGCGCUGcGUg -3'
miRNA:   3'- -UGCGCGCAC-CGGGCcCGg-------UGCGAC-CA- -5'
31017 5' -65.9 NC_006560.1 + 129420 0.66 0.45627
Target:  5'- cUGUGCGgcGGCCUGGcGCagcgucuGCGCUGGg -3'
miRNA:   3'- uGCGCGCa-CCGGGCC-CGg------UGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 16301 0.66 0.45627
Target:  5'- -gGCGCGgcggGGCgCGGGCC-CGCg--- -3'
miRNA:   3'- ugCGCGCa---CCGgGCCCGGuGCGacca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.