miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 3' -62.4 NC_006560.1 + 71881 0.66 0.691253
Target:  5'- -aCCCUCGUcaccaucggCGCUCugGGGAUGGggcucuACCGCg -3'
miRNA:   3'- cgGGGAGUA---------GCGGG--CCCUGCC------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 47227 0.66 0.691253
Target:  5'- aGCCCCUCcccccgCGaCCCccccaacccaaaGGGAgccuCGGcGCCGCg -3'
miRNA:   3'- -CGGGGAGua----GC-GGG------------CCCU----GCC-UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 53226 0.66 0.691253
Target:  5'- gGCCCUggcgggcuaCGUCGUCUGGGccuCGGGCaGCc -3'
miRNA:   3'- -CGGGGa--------GUAGCGGGCCCu--GCCUGgCG- -5'
31018 3' -62.4 NC_006560.1 + 76836 0.66 0.691253
Target:  5'- gGCgCCCUCGggccaagagCGCCgagCGGGcGgGGGCCGUc -3'
miRNA:   3'- -CG-GGGAGUa--------GCGG---GCCC-UgCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 98180 0.66 0.691253
Target:  5'- cUCCUUCuUCgaggGCCuCGGGGacgUGGGCCGCg -3'
miRNA:   3'- cGGGGAGuAG----CGG-GCCCU---GCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 117360 0.66 0.691253
Target:  5'- gGCCCg-CcgCGCCCGG--CGG-CCGCc -3'
miRNA:   3'- -CGGGgaGuaGCGGGCCcuGCCuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 147528 0.66 0.691253
Target:  5'- -gCUgUCGUCGCUguCGGuGACGGGCUGg -3'
miRNA:   3'- cgGGgAGUAGCGG--GCC-CUGCCUGGCg -5'
31018 3' -62.4 NC_006560.1 + 5667 0.66 0.691253
Target:  5'- cGCCCCggggCG-CgGGGGCGGccggcggcGCCGCc -3'
miRNA:   3'- -CGGGGaguaGCgGgCCCUGCC--------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 129772 0.66 0.691253
Target:  5'- cGCCa-UCAUCgGCCUGcuGGACGcGcACCGCa -3'
miRNA:   3'- -CGGggAGUAG-CGGGC--CCUGC-C-UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 101990 0.66 0.690299
Target:  5'- gGCCCgCgaaggaGCCgGGGGggcgguccuccgcCGGACCGCa -3'
miRNA:   3'- -CGGG-Gaguag-CGGgCCCU-------------GCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 28192 0.66 0.682654
Target:  5'- gGUCCCgggcCGgcgGCCCGGGcggggagcgucggccCGGGCCGCc -3'
miRNA:   3'- -CGGGGa---GUag-CGGGCCCu--------------GCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 29750 0.66 0.681697
Target:  5'- aGCUCUgcga-GCCCGGGcccgccucccGgGGGCCGCg -3'
miRNA:   3'- -CGGGGaguagCGGGCCC----------UgCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 11786 0.66 0.681697
Target:  5'- gGCgUCUCGcCGCCgGGGGgGGGCuCGg -3'
miRNA:   3'- -CGgGGAGUaGCGGgCCCUgCCUG-GCg -5'
31018 3' -62.4 NC_006560.1 + 41395 0.66 0.681697
Target:  5'- cGUCCUggacgagCGCCCGcuGGACGGACaCGg -3'
miRNA:   3'- -CGGGGagua---GCGGGC--CCUGCCUG-GCg -5'
31018 3' -62.4 NC_006560.1 + 65016 0.66 0.681697
Target:  5'- aGCCCCU--UC-CCCGGacuGACGGcCCGg -3'
miRNA:   3'- -CGGGGAguAGcGGGCC---CUGCCuGGCg -5'
31018 3' -62.4 NC_006560.1 + 81784 0.66 0.681697
Target:  5'- uGCCCCcCggCGCCCcc-GCGGGgCGCg -3'
miRNA:   3'- -CGGGGaGuaGCGGGcccUGCCUgGCG- -5'
31018 3' -62.4 NC_006560.1 + 100198 0.66 0.681697
Target:  5'- aGCgUCUCggCGCCCGGcgcccaGACGcGcCCGCc -3'
miRNA:   3'- -CGgGGAGuaGCGGGCC------CUGC-CuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 142459 0.66 0.681697
Target:  5'- gGCCCCgCAg-GUgCGGcGGCGG-CCGCc -3'
miRNA:   3'- -CGGGGaGUagCGgGCC-CUGCCuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 99186 0.66 0.681697
Target:  5'- cGCCCC-CGgaggcggCGCCUGccgcGACGGAagcgaCCGCg -3'
miRNA:   3'- -CGGGGaGUa------GCGGGCc---CUGCCU-----GGCG- -5'
31018 3' -62.4 NC_006560.1 + 7170 0.66 0.681697
Target:  5'- cCCCCUCccccCGCCCcc-GCGGGcCCGCg -3'
miRNA:   3'- cGGGGAGua--GCGGGcccUGCCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.