miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 5' -52 NC_006560.1 + 133139 0.66 0.979756
Target:  5'- uGGGCGGCCUggCCGCGGCaGCGc--- -3'
miRNA:   3'- -CUCGUCGGGuaGGUGUUGaUGUacug -5'
31018 5' -52 NC_006560.1 + 76251 0.66 0.979756
Target:  5'- cAGCAGCgcgCCGaggCCACGgACcGCGUGACg -3'
miRNA:   3'- cUCGUCG---GGUa--GGUGU-UGaUGUACUG- -5'
31018 5' -52 NC_006560.1 + 41135 0.66 0.977359
Target:  5'- uGAGguGCCgCAgggagCgCACGGCgaGCAUGGCg -3'
miRNA:   3'- -CUCguCGG-GUa----G-GUGUUGa-UGUACUG- -5'
31018 5' -52 NC_006560.1 + 81438 0.66 0.977359
Target:  5'- gGGGCGGCCCcggUCGCGGCgucggGCGcGGCc -3'
miRNA:   3'- -CUCGUCGGGua-GGUGUUGa----UGUaCUG- -5'
31018 5' -52 NC_006560.1 + 89616 0.66 0.977359
Target:  5'- --cCAGCCC--CCugGGCUACGUGuACg -3'
miRNA:   3'- cucGUCGGGuaGGugUUGAUGUAC-UG- -5'
31018 5' -52 NC_006560.1 + 103262 0.66 0.977359
Target:  5'- -cGCGGCUCAcCCGCAGCgucuucUGCGaGACg -3'
miRNA:   3'- cuCGUCGGGUaGGUGUUG------AUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 87569 0.66 0.977359
Target:  5'- cGGGCAGCCCccgcgccccgagGUCCugGACgaacGCcucgGGCa -3'
miRNA:   3'- -CUCGUCGGG------------UAGGugUUGa---UGua--CUG- -5'
31018 5' -52 NC_006560.1 + 96618 0.66 0.976343
Target:  5'- aGAGCacGGCCUuccaCCGCGACgaccacgagucggACAUGGCg -3'
miRNA:   3'- -CUCG--UCGGGua--GGUGUUGa------------UGUACUG- -5'
31018 5' -52 NC_006560.1 + 9901 0.66 0.974758
Target:  5'- cGAGCagGGCCCGUaCCGCcgcACUGCcaGGCg -3'
miRNA:   3'- -CUCG--UCGGGUA-GGUGu--UGAUGuaCUG- -5'
31018 5' -52 NC_006560.1 + 48201 0.66 0.974758
Target:  5'- cGGCGGCCC-UCUACAACcgccUGCucgagGACc -3'
miRNA:   3'- cUCGUCGGGuAGGUGUUG----AUGua---CUG- -5'
31018 5' -52 NC_006560.1 + 118341 0.66 0.974758
Target:  5'- cGGCGGCCC--CCGCGACgACGccggGGCg -3'
miRNA:   3'- cUCGUCGGGuaGGUGUUGaUGUa---CUG- -5'
31018 5' -52 NC_006560.1 + 118819 0.66 0.974758
Target:  5'- -cGCGGCCCGUCCugG-CgcCGUucGACg -3'
miRNA:   3'- cuCGUCGGGUAGGugUuGauGUA--CUG- -5'
31018 5' -52 NC_006560.1 + 28920 0.66 0.974758
Target:  5'- gGGGcCGGCCCGcCCGCcccCUcaACAUGGCg -3'
miRNA:   3'- -CUC-GUCGGGUaGGUGuu-GA--UGUACUG- -5'
31018 5' -52 NC_006560.1 + 58850 0.66 0.974758
Target:  5'- gGGGCGGCCCugggGCAGCaGCAcGACg -3'
miRNA:   3'- -CUCGUCGGGuaggUGUUGaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 30166 0.66 0.971946
Target:  5'- uGGGcCAGCCCGUCaccgACAGCgacgACAgcGACg -3'
miRNA:   3'- -CUC-GUCGGGUAGg---UGUUGa---UGUa-CUG- -5'
31018 5' -52 NC_006560.1 + 50917 0.66 0.971946
Target:  5'- -uGCAGCCCGucgaggccUCCGCGGuccccCUGC-UGGCg -3'
miRNA:   3'- cuCGUCGGGU--------AGGUGUU-----GAUGuACUG- -5'
31018 5' -52 NC_006560.1 + 118007 0.66 0.971946
Target:  5'- cGGCGGCCgAggCCGCGGC-GCAccUGGCg -3'
miRNA:   3'- cUCGUCGGgUa-GGUGUUGaUGU--ACUG- -5'
31018 5' -52 NC_006560.1 + 7721 0.66 0.971946
Target:  5'- cGAGCAG-CCGUCUgcGCAcCUGCA-GACc -3'
miRNA:   3'- -CUCGUCgGGUAGG--UGUuGAUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 123211 0.66 0.968916
Target:  5'- cGGCGGgCCGUCCucgcCGACUucagccuCGUGACc -3'
miRNA:   3'- cUCGUCgGGUAGGu---GUUGAu------GUACUG- -5'
31018 5' -52 NC_006560.1 + 31757 0.66 0.968916
Target:  5'- uGGGCGGCCgCAgcuUCCACAGCcug--GACu -3'
miRNA:   3'- -CUCGUCGG-GU---AGGUGUUGauguaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.