miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 3' -55.7 NC_006560.1 + 121713 0.66 0.910998
Target:  5'- ---cGAAgCGCGuCUCCgGCGGGCaGCc -3'
miRNA:   3'- uauaUUUgGCGC-GAGGgCGCCUGgUG- -5'
31019 3' -55.7 NC_006560.1 + 114393 0.66 0.910998
Target:  5'- ----cGACCGCGCUCauGUacGACCACu -3'
miRNA:   3'- uauauUUGGCGCGAGggCGc-CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 43739 0.66 0.910998
Target:  5'- -cGUAcuCCGCgGC-CgCCGCGGugCGCc -3'
miRNA:   3'- uaUAUuuGGCG-CGaG-GGCGCCugGUG- -5'
31019 3' -55.7 NC_006560.1 + 23902 0.66 0.910998
Target:  5'- -----cGCCGaCGCcgCCCGCGcGGCCcGCa -3'
miRNA:   3'- uauauuUGGC-GCGa-GGGCGC-CUGG-UG- -5'
31019 3' -55.7 NC_006560.1 + 107394 0.66 0.910998
Target:  5'- -----cACCGCGCUCCUGCuguuucccaacGGcACCGu -3'
miRNA:   3'- uauauuUGGCGCGAGGGCG-----------CC-UGGUg -5'
31019 3' -55.7 NC_006560.1 + 88446 0.66 0.910998
Target:  5'- ---gGggUCGCGC--CCGCGGGCgCGCg -3'
miRNA:   3'- uauaUuuGGCGCGagGGCGCCUG-GUG- -5'
31019 3' -55.7 NC_006560.1 + 59867 0.66 0.910998
Target:  5'- ---cGGGCCcugaGgGC-CCCGCGGGCUGCu -3'
miRNA:   3'- uauaUUUGG----CgCGaGGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 50616 0.66 0.910998
Target:  5'- ----uAACCuCGCgCCCGUGGGCgACa -3'
miRNA:   3'- uauauUUGGcGCGaGGGCGCCUGgUG- -5'
31019 3' -55.7 NC_006560.1 + 21905 0.66 0.91039
Target:  5'- ----cGACCGCGCUcggagccccggcgCCCcCGGGCgGCg -3'
miRNA:   3'- uauauUUGGCGCGA-------------GGGcGCCUGgUG- -5'
31019 3' -55.7 NC_006560.1 + 52399 0.66 0.91039
Target:  5'- -----cGCCGCGCgcgCCgcgcagcuggcggCGCGGcGCCACa -3'
miRNA:   3'- uauauuUGGCGCGa--GG-------------GCGCC-UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 144102 0.66 0.91039
Target:  5'- -gGUGGucuCCGCcggccccugccugGCUCCgGCGG-CCGCg -3'
miRNA:   3'- uaUAUUu--GGCG-------------CGAGGgCGCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 20100 0.66 0.904813
Target:  5'- --cUAGACCGgGUUCCCcUGGACUcCg -3'
miRNA:   3'- uauAUUUGGCgCGAGGGcGCCUGGuG- -5'
31019 3' -55.7 NC_006560.1 + 18849 0.66 0.904813
Target:  5'- ---gAGGCCGCG-UCUCGCcucugggcgGGGCCGCc -3'
miRNA:   3'- uauaUUUGGCGCgAGGGCG---------CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 144041 0.66 0.904813
Target:  5'- -----cGCCGgGCUcgccuaagcggCCCGCGG-CCGCc -3'
miRNA:   3'- uauauuUGGCgCGA-----------GGGCGCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 3781 0.66 0.904813
Target:  5'- ---gGGACCGCGg-CgCGCGcGGCCGCc -3'
miRNA:   3'- uauaUUUGGCGCgaGgGCGC-CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 33646 0.66 0.904813
Target:  5'- -----cGCCGgggGCggCCGCGGGCCGCu -3'
miRNA:   3'- uauauuUGGCg--CGagGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 99181 0.66 0.904813
Target:  5'- -----cGCCGCGCcCCCggagGCGGcgccuGCCGCg -3'
miRNA:   3'- uauauuUGGCGCGaGGG----CGCC-----UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 105973 0.66 0.904813
Target:  5'- -gAUGAACgagccucuCGUGCUCCCG-GGcCCGCc -3'
miRNA:   3'- uaUAUUUG--------GCGCGAGGGCgCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 135354 0.66 0.904813
Target:  5'- ----cGGCCGCGgaCCggaguCGCGcGGCCACg -3'
miRNA:   3'- uauauUUGGCGCgaGG-----GCGC-CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 72354 0.66 0.898388
Target:  5'- gGUGUGGGgCGCgGCcCUCGCGGgggcGCCGCu -3'
miRNA:   3'- -UAUAUUUgGCG-CGaGGGCGCC----UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.