miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 3' -59.7 NC_006560.1 + 149154 0.66 0.809952
Target:  5'- cGGGg--CGGcCCCcaGGGGcGGCgCGCGGg -3'
miRNA:   3'- -CCUaaaGCCaGGG--CCCC-CUGgGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 40935 0.66 0.809952
Target:  5'- gGGGUcccgCgGGUCuUCGGGGGgcGCCCGCu- -3'
miRNA:   3'- -CCUAaa--G-CCAG-GGCCCCC--UGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 131803 0.66 0.809952
Target:  5'- cGGA--UCGG-CUCGaGGGGuuCCCGCa- -3'
miRNA:   3'- -CCUaaAGCCaGGGC-CCCCu-GGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 34721 0.66 0.804875
Target:  5'- ----cUCGGg-CCGGGGGucgcucgccgcggcgGCCCGCGc -3'
miRNA:   3'- ccuaaAGCCagGGCCCCC---------------UGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 105079 0.66 0.801462
Target:  5'- cGGGUcUCGccGUCCuCGcGGGGccgGCCCGgGAa -3'
miRNA:   3'- -CCUAaAGC--CAGG-GC-CCCC---UGGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 57871 0.66 0.792832
Target:  5'- ------gGGcUCCCGGGGcccCCCGCGGg -3'
miRNA:   3'- ccuaaagCC-AGGGCCCCcu-GGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 45141 0.66 0.792832
Target:  5'- uGGGgg-CGGUCCCGucagaucccGGuGGACCCGa-- -3'
miRNA:   3'- -CCUaaaGCCAGGGC---------CC-CCUGGGCgcu -5'
31020 3' -59.7 NC_006560.1 + 75404 0.66 0.792832
Target:  5'- cGGAgaagcucgCGG-CCCGGcGcGCCCGCGAc -3'
miRNA:   3'- -CCUaaa-----GCCaGGGCCcCcUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 103087 0.66 0.792832
Target:  5'- gGGGgacCGGUCCCGcccccGcGGACCCgGCGGc -3'
miRNA:   3'- -CCUaaaGCCAGGGCc----C-CCUGGG-CGCU- -5'
31020 3' -59.7 NC_006560.1 + 122788 0.66 0.792832
Target:  5'- cGGAgcUUCGGcgggUCCGGGGGguaCgGCGAg -3'
miRNA:   3'- -CCUa-AAGCCa---GGGCCCCCug-GgCGCU- -5'
31020 3' -59.7 NC_006560.1 + 5147 0.66 0.784068
Target:  5'- cGGcg--CGGggCCCGGGccGGGgCCGCGGg -3'
miRNA:   3'- -CCuaaaGCCa-GGGCCC--CCUgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 45315 0.66 0.784068
Target:  5'- gGGAcguugUCGGggggcaCCCaGGGGAgcgcguccgacCCCGCGAc -3'
miRNA:   3'- -CCUaa---AGCCa-----GGGcCCCCU-----------GGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 56568 0.66 0.784068
Target:  5'- gGGAgcgagggUCGGUCCgGGgcGGGAUCgGCa- -3'
miRNA:   3'- -CCUaa-----AGCCAGGgCC--CCCUGGgCGcu -5'
31020 3' -59.7 NC_006560.1 + 130989 0.66 0.775179
Target:  5'- cGAgUUCGaGcCCCgGGGGGGCgCCGuCGAc -3'
miRNA:   3'- cCUaAAGC-CaGGG-CCCCCUG-GGC-GCU- -5'
31020 3' -59.7 NC_006560.1 + 80146 0.66 0.775179
Target:  5'- cGGGgcacUGGUCCCGGGGcGGgucgagguccCCCgGCGGg -3'
miRNA:   3'- -CCUaaa-GCCAGGGCCCC-CU----------GGG-CGCU- -5'
31020 3' -59.7 NC_006560.1 + 65174 0.66 0.775179
Target:  5'- uGAUcgCGGUCCCGGuGucCCCGuCGAc -3'
miRNA:   3'- cCUAaaGCCAGGGCCcCcuGGGC-GCU- -5'
31020 3' -59.7 NC_006560.1 + 50273 0.66 0.775179
Target:  5'- cGGGc-UCGGcgcgccCCCGGGGGuACCUGgGGg -3'
miRNA:   3'- -CCUaaAGCCa-----GGGCCCCC-UGGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 135384 0.66 0.775179
Target:  5'- gGGGgggCGGaggCCgCGGGGGugUCGCu- -3'
miRNA:   3'- -CCUaaaGCCa--GG-GCCCCCugGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 132682 0.67 0.766173
Target:  5'- cGAggUUGGUgCCGGGGcgGACCgGCa- -3'
miRNA:   3'- cCUaaAGCCAgGGCCCC--CUGGgCGcu -5'
31020 3' -59.7 NC_006560.1 + 146758 0.67 0.747839
Target:  5'- -----cUGGgCCCGGGucuGGGCCCGCGc -3'
miRNA:   3'- ccuaaaGCCaGGGCCC---CCUGGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.