miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 5' -57.7 NC_006560.1 + 114355 0.66 0.850694
Target:  5'- gGCCGggGGCGCguaCgCGGGcgaccGCGAGGg- -3'
miRNA:   3'- gCGGUuaCCGCGa--G-GCCC-----UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 73860 0.66 0.850694
Target:  5'- gCGCCAA-GGCGCUgCuGGcCGGGGa- -3'
miRNA:   3'- -GCGGUUaCCGCGAgGcCCuGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 14288 0.66 0.850694
Target:  5'- uCGCCGGcGaGCGCggcgCCGGGGagGAGGUu -3'
miRNA:   3'- -GCGGUUaC-CGCGa---GGCCCUg-CUCUAu -5'
31020 5' -57.7 NC_006560.1 + 11678 0.66 0.850694
Target:  5'- gGCUc--GGCGgUCCGGGcggGCGGGAUc -3'
miRNA:   3'- gCGGuuaCCGCgAGGCCC---UGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 56419 0.66 0.84912
Target:  5'- gGCCGGggagGGUGCgguugccccgcgCCGGGGuCGAGGa- -3'
miRNA:   3'- gCGGUUa---CCGCGa-----------GGCCCU-GCUCUau -5'
31020 5' -57.7 NC_006560.1 + 71471 0.66 0.847538
Target:  5'- gCGCCGAgggGGgauCGCgggaucguggucaCCGGGGCGAGGa- -3'
miRNA:   3'- -GCGGUUa--CC---GCGa------------GGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 139305 0.66 0.842747
Target:  5'- uGCCccgugGGCGCcUCGGGcGCGGGAg- -3'
miRNA:   3'- gCGGuua--CCGCGaGGCCC-UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 135605 0.66 0.842747
Target:  5'- gGCCGcaGUGGU--UCCGGGACGuGGc- -3'
miRNA:   3'- gCGGU--UACCGcgAGGCCCUGCuCUau -5'
31020 5' -57.7 NC_006560.1 + 94739 0.66 0.842747
Target:  5'- cCGUCGAgcUGGCGCUguucggccgCCGGGcCGAGc-- -3'
miRNA:   3'- -GCGGUU--ACCGCGA---------GGCCCuGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 25849 0.66 0.842747
Target:  5'- gGCCg--GGCGCgcgcCCGGGGCccGAUGc -3'
miRNA:   3'- gCGGuuaCCGCGa---GGCCCUGcuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 85509 0.66 0.835432
Target:  5'- uCGCCGGgcugcugcccgcgggGGCGCUUggggGGGGCGGGGg- -3'
miRNA:   3'- -GCGGUUa--------------CCGCGAGg---CCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 82789 0.66 0.83461
Target:  5'- cCGCgCGcgGGCGCg-CGGGAgGGGGc- -3'
miRNA:   3'- -GCG-GUuaCCGCGagGCCCUgCUCUau -5'
31020 5' -57.7 NC_006560.1 + 22642 0.66 0.83461
Target:  5'- cCGCCGAgacgGGCGUcgccgCCGGGcgcaGCGAGc-- -3'
miRNA:   3'- -GCGGUUa---CCGCGa----GGCCC----UGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 26781 0.66 0.83461
Target:  5'- uGCCcgcGGCGCggaggagCCGGGgagaGCGAGAc- -3'
miRNA:   3'- gCGGuuaCCGCGa------GGCCC----UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 55629 0.66 0.83461
Target:  5'- -aCCGGUGGCGUUUCGccGCGAGAa- -3'
miRNA:   3'- gcGGUUACCGCGAGGCccUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 65404 0.66 0.83461
Target:  5'- gGUCGAgGGCGCUUCGGcGgaacGCGGGAg- -3'
miRNA:   3'- gCGGUUaCCGCGAGGCC-C----UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 120122 0.66 0.83461
Target:  5'- gCGCCc-UGG-GCcCCGGGGCGuGGUGg -3'
miRNA:   3'- -GCGGuuACCgCGaGGCCCUGCuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 512 0.66 0.826292
Target:  5'- cCGCCAcgGGCGCcggGGGGCGGcGGc- -3'
miRNA:   3'- -GCGGUuaCCGCGaggCCCUGCU-CUau -5'
31020 5' -57.7 NC_006560.1 + 142368 0.66 0.826292
Target:  5'- gGCCGggGGCGgcggcCUCCGGGAgggcCGAGc-- -3'
miRNA:   3'- gCGGUuaCCGC-----GAGGCCCU----GCUCuau -5'
31020 5' -57.7 NC_006560.1 + 132239 0.66 0.826292
Target:  5'- gGCCc-UGGCgggGCUgUGGGGCGAGGa- -3'
miRNA:   3'- gCGGuuACCG---CGAgGCCCUGCUCUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.