miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 135987 0.66 0.835293
Target:  5'- cGCGCgGUgGCggCCGG-GGGCGGgaCCg -3'
miRNA:   3'- -CGCG-CAgCGagGGCUgCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 117466 0.66 0.835293
Target:  5'- cGUGCGgCGCgagCCCGGgcgucCGGGCucgcuggUCCa -3'
miRNA:   3'- -CGCGCaGCGa--GGGCU-----GCCCGuca----AGG- -5'
31022 3' -59 NC_006560.1 + 13540 0.66 0.835293
Target:  5'- aCGCGcCGCa--CGuCGGGCGGgUCCg -3'
miRNA:   3'- cGCGCaGCGaggGCuGCCCGUCaAGG- -5'
31022 3' -59 NC_006560.1 + 5337 0.66 0.835293
Target:  5'- cCGgGUCcgGCgUCCuCGGCGGGCcGUcgUCCg -3'
miRNA:   3'- cGCgCAG--CG-AGG-GCUGCCCGuCA--AGG- -5'
31022 3' -59 NC_006560.1 + 132100 0.66 0.835293
Target:  5'- uGCGCGUgUGCggcgggCCggaCGGCGGGuCGGUcgCCg -3'
miRNA:   3'- -CGCGCA-GCGa-----GG---GCUGCCC-GUCAa-GG- -5'
31022 3' -59 NC_006560.1 + 55658 0.66 0.832086
Target:  5'- cCGCGUCGCggugccaggugaaCUCGcaggugagguuGCGGGCGGgcgCCa -3'
miRNA:   3'- cGCGCAGCGa------------GGGC-----------UGCCCGUCaa-GG- -5'
31022 3' -59 NC_006560.1 + 44379 0.66 0.827225
Target:  5'- cGCGCGgCGgUCCCGcccuCGGagGCGGagCCg -3'
miRNA:   3'- -CGCGCaGCgAGGGCu---GCC--CGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 55943 0.66 0.827225
Target:  5'- cCGCGUCcaGgUCCCguagcgGugGGGguGUUCg -3'
miRNA:   3'- cGCGCAG--CgAGGG------CugCCCguCAAGg -5'
31022 3' -59 NC_006560.1 + 77930 0.66 0.827225
Target:  5'- uGCGCGUccugcccgCGgUCCCGGcCGGGCcg--CCc -3'
miRNA:   3'- -CGCGCA--------GCgAGGGCU-GCCCGucaaGG- -5'
31022 3' -59 NC_006560.1 + 121529 0.66 0.827225
Target:  5'- cGCGCgGUCGCcgccaaagUCCCGcCcccucagcugGGGCGGgaCCa -3'
miRNA:   3'- -CGCG-CAGCG--------AGGGCuG----------CCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 131376 0.66 0.827225
Target:  5'- gGCGCGgggggCGCggugCUGGCGGGCGcuggCCg -3'
miRNA:   3'- -CGCGCa----GCGag--GGCUGCCCGUcaa-GG- -5'
31022 3' -59 NC_006560.1 + 144384 0.66 0.827225
Target:  5'- gGCgGCGUcCGCgggCCGGCGGGCcccccGGgccUCCg -3'
miRNA:   3'- -CG-CGCA-GCGag-GGCUGCCCG-----UCa--AGG- -5'
31022 3' -59 NC_006560.1 + 8829 0.66 0.827225
Target:  5'- cCGCGUCGg-CCgGccGCGGG-GGUUCCa -3'
miRNA:   3'- cGCGCAGCgaGGgC--UGCCCgUCAAGG- -5'
31022 3' -59 NC_006560.1 + 39524 0.66 0.826409
Target:  5'- uCGCGUCGC-CgCCGuCGGGCcccucgaccuccgAGcgCCg -3'
miRNA:   3'- cGCGCAGCGaG-GGCuGCCCG-------------UCaaGG- -5'
31022 3' -59 NC_006560.1 + 96362 0.66 0.818992
Target:  5'- cCGCG-CGCgCCCGACGGcCAGaaCUa -3'
miRNA:   3'- cGCGCaGCGaGGGCUGCCcGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 105021 0.66 0.818992
Target:  5'- cGCGCGgaacgggCGCUCCgCGGCgccgccgcggggGGGguGcUCUg -3'
miRNA:   3'- -CGCGCa------GCGAGG-GCUG------------CCCguCaAGG- -5'
31022 3' -59 NC_006560.1 + 58 0.66 0.818992
Target:  5'- gGCGCGUUugggGCgggUCCgGGCGGGCcc-UCCc -3'
miRNA:   3'- -CGCGCAG----CG---AGGgCUGCCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 9175 0.66 0.818992
Target:  5'- gGCGCcUCGggCCCgcGACGGGCgucAGcgCCg -3'
miRNA:   3'- -CGCGcAGCgaGGG--CUGCCCG---UCaaGG- -5'
31022 3' -59 NC_006560.1 + 150387 0.66 0.818992
Target:  5'- gGCGCGUUugggGCgggUCCgGGCGGGCcc-UCCc -3'
miRNA:   3'- -CGCGCAG----CG---AGGgCUGCCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 116844 0.66 0.815654
Target:  5'- gGgGCGguagagcaggaagCGCUcCCCGGCGGGCuuGGUgaggacgggCCg -3'
miRNA:   3'- -CgCGCa------------GCGA-GGGCUGCCCG--UCAa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.