miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 78526 0.65 0.699523
Target:  5'- -cUGCGGGagGUCGUGUCguCCgacguggagacgugGGCCg -3'
miRNA:   3'- gcACGCCCagCAGCGCGGguGG--------------UCGG- -5'
31023 3' -62 NC_006560.1 + 80985 0.66 0.69282
Target:  5'- gCGUGCGcGcgacacauGUCGgcgaGCGCCCccGCCuGGCCg -3'
miRNA:   3'- -GCACGC-C--------CAGCag--CGCGGG--UGG-UCGG- -5'
31023 3' -62 NC_006560.1 + 65334 0.66 0.69282
Target:  5'- gGUGgGGGcCGgcUCGcCGgCC-CCAGCCc -3'
miRNA:   3'- gCACgCCCaGC--AGC-GCgGGuGGUCGG- -5'
31023 3' -62 NC_006560.1 + 87033 0.66 0.69282
Target:  5'- gGUGCGGGUgaGggUGaUGCCgGCgAGCCg -3'
miRNA:   3'- gCACGCCCAg-Ca-GC-GCGGgUGgUCGG- -5'
31023 3' -62 NC_006560.1 + 4712 0.66 0.69282
Target:  5'- gCG-GCGGcGcUCGcUGCGCCCGgCGGCg -3'
miRNA:   3'- -GCaCGCC-C-AGCaGCGCGGGUgGUCGg -5'
31023 3' -62 NC_006560.1 + 35005 0.66 0.69282
Target:  5'- --cGCGGGcCGgccggGCGCCCccuCCGGUCc -3'
miRNA:   3'- gcaCGCCCaGCag---CGCGGGu--GGUCGG- -5'
31023 3' -62 NC_006560.1 + 39457 0.66 0.69282
Target:  5'- gCGcUGCGcGGUCGgCGcCGCCgGCgCGGCg -3'
miRNA:   3'- -GC-ACGC-CCAGCaGC-GCGGgUG-GUCGg -5'
31023 3' -62 NC_006560.1 + 64848 0.66 0.69282
Target:  5'- --gGCuGGg-GUCGCGCgCGCCGGCg -3'
miRNA:   3'- gcaCGcCCagCAGCGCGgGUGGUCGg -5'
31023 3' -62 NC_006560.1 + 147658 0.66 0.69282
Target:  5'- aCG-GCGGuGcCGgCGCGCaCCGCCuccucGGCCu -3'
miRNA:   3'- -GCaCGCC-CaGCaGCGCG-GGUGG-----UCGG- -5'
31023 3' -62 NC_006560.1 + 142294 0.66 0.69282
Target:  5'- gCG-GCGGG-CG-CG-GCCggCGCCGGCCg -3'
miRNA:   3'- -GCaCGCCCaGCaGCgCGG--GUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 7243 0.66 0.69282
Target:  5'- --cGCGGGuaUCGgccCGaCGCCCGCguGCg -3'
miRNA:   3'- gcaCGCCC--AGCa--GC-GCGGGUGguCGg -5'
31023 3' -62 NC_006560.1 + 128684 0.66 0.69282
Target:  5'- aCGggGCGGGgg--CGCGCUCggaGCCGGUCu -3'
miRNA:   3'- -GCa-CGCCCagcaGCGCGGG---UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 67287 0.66 0.69282
Target:  5'- cCGgGUGGGUCGcCGCuccacCCCGCUuccGCCu -3'
miRNA:   3'- -GCaCGCCCAGCaGCGc----GGGUGGu--CGG- -5'
31023 3' -62 NC_006560.1 + 5291 0.66 0.687057
Target:  5'- gCGU-CGGcGUCGUCGuCGgCCGCCgcgugcgacggcggcGGCCc -3'
miRNA:   3'- -GCAcGCC-CAGCAGC-GCgGGUGG---------------UCGG- -5'
31023 3' -62 NC_006560.1 + 85590 0.66 0.683207
Target:  5'- gCG-GCGGGcgcggCGUCGaGCUCGCgCAGCg -3'
miRNA:   3'- -GCaCGCCCa----GCAGCgCGGGUG-GUCGg -5'
31023 3' -62 NC_006560.1 + 21723 0.66 0.683207
Target:  5'- cCGggGCGGaGcCGgccgggCGcCGCCCgucGCCGGCCg -3'
miRNA:   3'- -GCa-CGCC-CaGCa-----GC-GCGGG---UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 31888 0.66 0.683207
Target:  5'- cCGcGCGaGGcCGggcgUGUGCCCGCC-GCCc -3'
miRNA:   3'- -GCaCGC-CCaGCa---GCGCGGGUGGuCGG- -5'
31023 3' -62 NC_006560.1 + 38930 0.66 0.683207
Target:  5'- --gGcCGGGUC--CGUGCgCCGCCAGCg -3'
miRNA:   3'- gcaC-GCCCAGcaGCGCG-GGUGGUCGg -5'
31023 3' -62 NC_006560.1 + 77550 0.66 0.683207
Target:  5'- uCGgGCGcuUCGU-GCGCcaCCGCCAGCCg -3'
miRNA:   3'- -GCaCGCccAGCAgCGCG--GGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 138226 0.66 0.683207
Target:  5'- uCGcGCGGGgccgUCGUCGUccggcagacGCCCGugGGCCu -3'
miRNA:   3'- -GCaCGCCC----AGCAGCG---------CGGGUggUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.