miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 5' -56.2 NC_006560.1 + 97791 0.66 0.888331
Target:  5'- cGAGGCCGACGGGCccu---CGUCg-- -3'
miRNA:   3'- -UUCCGGCUGUCCGccaaguGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 128839 0.66 0.888331
Target:  5'- -cGGCCG-CGGcGCGGagcucgCGCGUCUa- -3'
miRNA:   3'- uuCCGGCuGUC-CGCCaa----GUGCAGAag -5'
31023 5' -56.2 NC_006560.1 + 33783 0.66 0.888331
Target:  5'- cGGGGCCGugGGGCGcGcgaagUCGCGg---- -3'
miRNA:   3'- -UUCCGGCugUCCGC-Ca----AGUGCagaag -5'
31023 5' -56.2 NC_006560.1 + 56206 0.66 0.888331
Target:  5'- uGGGCCcg-AGGCGGU---CGUCUUCg -3'
miRNA:   3'- uUCCGGcugUCCGCCAaguGCAGAAG- -5'
31023 5' -56.2 NC_006560.1 + 8835 0.66 0.874117
Target:  5'- -cGGCCGGCcgcGGgGGUUcCAUGUCg-- -3'
miRNA:   3'- uuCCGGCUGu--CCgCCAA-GUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 8359 0.66 0.874117
Target:  5'- -cGGCCGACGGacucgggcuGCGGgUC-CGUCUgUCg -3'
miRNA:   3'- uuCCGGCUGUC---------CGCCaAGuGCAGA-AG- -5'
31023 5' -56.2 NC_006560.1 + 32654 0.66 0.874117
Target:  5'- gGAGGCCGcCcGGCGGcggCACGgggUCg -3'
miRNA:   3'- -UUCCGGCuGuCCGCCaa-GUGCagaAG- -5'
31023 5' -56.2 NC_006560.1 + 72045 0.66 0.866675
Target:  5'- cGAGGCgCGGUGGGCGGgggCGaugGUCUUCu -3'
miRNA:   3'- -UUCCG-GCUGUCCGCCaa-GUg--CAGAAG- -5'
31023 5' -56.2 NC_006560.1 + 76851 0.66 0.866675
Target:  5'- aGAGcGCCGAgCGGGCGGgggC-CGUCg-- -3'
miRNA:   3'- -UUC-CGGCU-GUCCGCCaa-GuGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 39801 0.66 0.866675
Target:  5'- gGAGGCCGGCccGGGCuc--CGCGUCcUCg -3'
miRNA:   3'- -UUCCGGCUG--UCCGccaaGUGCAGaAG- -5'
31023 5' -56.2 NC_006560.1 + 26244 0.67 0.851153
Target:  5'- gGAGGCCGGgcCGGaGgGGggCGCGUCg-- -3'
miRNA:   3'- -UUCCGGCU--GUC-CgCCaaGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 135122 0.67 0.851153
Target:  5'- -cGaGCCGGCGGGCGGc-CACGUg--- -3'
miRNA:   3'- uuC-CGGCUGUCCGCCaaGUGCAgaag -5'
31023 5' -56.2 NC_006560.1 + 73286 0.67 0.851153
Target:  5'- --cGCCGACGuGGCGGccCACGUCc-- -3'
miRNA:   3'- uucCGGCUGU-CCGCCaaGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 27583 0.67 0.842268
Target:  5'- uGAGGCCGccggcgcGCGGGUGGgcgcUCGCGcCUg- -3'
miRNA:   3'- -UUCCGGC-------UGUCCGCCa---AGUGCaGAag -5'
31023 5' -56.2 NC_006560.1 + 132247 0.67 0.834822
Target:  5'- cGGGGCUGugGggcgaggacGGCGGcUUCGCGUauccCUUCg -3'
miRNA:   3'- -UUCCGGCugU---------CCGCC-AAGUGCA----GAAG- -5'
31023 5' -56.2 NC_006560.1 + 99896 0.67 0.834822
Target:  5'- -cGGCgGGCGGcGCGGgguUCAUGUCg-- -3'
miRNA:   3'- uuCCGgCUGUC-CGCCa--AGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 11942 0.67 0.82637
Target:  5'- aGGGGCCGGCGGGCcaGGUccagggUCAgGUUggCu -3'
miRNA:   3'- -UUCCGGCUGUCCG--CCA------AGUgCAGaaG- -5'
31023 5' -56.2 NC_006560.1 + 12348 0.67 0.82637
Target:  5'- cGGGGCUGGCgGGGCGG---GCGUCUc- -3'
miRNA:   3'- -UUCCGGCUG-UCCGCCaagUGCAGAag -5'
31023 5' -56.2 NC_006560.1 + 3299 0.67 0.817738
Target:  5'- cGGGCgGGCGGGCGGUgaGCGcCg-- -3'
miRNA:   3'- uUCCGgCUGUCCGCCAagUGCaGaag -5'
31023 5' -56.2 NC_006560.1 + 1873 0.67 0.817738
Target:  5'- gGGGGUCG-CGGGCGGgggUCGCGggCggCg -3'
miRNA:   3'- -UUCCGGCuGUCCGCCa--AGUGCa-GaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.