miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 3' -56 NC_006560.1 + 132564 0.66 0.923163
Target:  5'- aGcgCgGCCgUCUgggucuugggGGCGUcCGACGCCCa -3'
miRNA:   3'- -CuaGgUGG-AGGa---------CCGCAaGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 97462 0.66 0.923163
Target:  5'- --aCCACgUCCUcGGUcgaGUUCGcGCGCCUg -3'
miRNA:   3'- cuaGGUGgAGGA-CCG---CAAGC-UGUGGG- -5'
31024 3' -56 NC_006560.1 + 44632 0.66 0.919848
Target:  5'- aGAUgCGCCgCCUGGCGgacacgugccuggCGACcAUCCu -3'
miRNA:   3'- -CUAgGUGGaGGACCGCaa-----------GCUG-UGGG- -5'
31024 3' -56 NC_006560.1 + 78027 0.66 0.91759
Target:  5'- -cUCCgACCcCCUGGCGccgUGGCGCgCg -3'
miRNA:   3'- cuAGG-UGGaGGACCGCaa-GCUGUGgG- -5'
31024 3' -56 NC_006560.1 + 115188 0.66 0.91759
Target:  5'- ---gCugCUCCUGGCGUaccgcaGACGCUUu -3'
miRNA:   3'- cuagGugGAGGACCGCAag----CUGUGGG- -5'
31024 3' -56 NC_006560.1 + 3917 0.66 0.91759
Target:  5'- cGUCCcCCUCCUccgccGCGggggCGGCGCCg -3'
miRNA:   3'- cUAGGuGGAGGAc----CGCaa--GCUGUGGg -5'
31024 3' -56 NC_006560.1 + 13558 0.66 0.91759
Target:  5'- gGGUCCGCCUUCUgcuccGGCGggggcagGGgGCCCc -3'
miRNA:   3'- -CUAGGUGGAGGA-----CCGCaag----CUgUGGG- -5'
31024 3' -56 NC_006560.1 + 16872 0.66 0.91759
Target:  5'- gGGUCCccggccaggACCUCgggGGCGUucgugUCGACcguGCCCg -3'
miRNA:   3'- -CUAGG---------UGGAGga-CCGCA-----AGCUG---UGGG- -5'
31024 3' -56 NC_006560.1 + 145509 0.66 0.91759
Target:  5'- uGUCCccuGCuCUCCcgGGCGggccUCGACccGCCCu -3'
miRNA:   3'- cUAGG---UG-GAGGa-CCGCa---AGCUG--UGGG- -5'
31024 3' -56 NC_006560.1 + 69248 0.66 0.911781
Target:  5'- --aCUACCUCCUGGCGcUgGAgGgCUu -3'
miRNA:   3'- cuaGGUGGAGGACCGCaAgCUgUgGG- -5'
31024 3' -56 NC_006560.1 + 52686 0.66 0.911781
Target:  5'- uGGUCCccaAgCUCCUGGCGcg-GGC-CCCg -3'
miRNA:   3'- -CUAGG---UgGAGGACCGCaagCUGuGGG- -5'
31024 3' -56 NC_006560.1 + 142198 0.66 0.911781
Target:  5'- gGcgCgGCCUCCgGGCGgcgCGcCACCa -3'
miRNA:   3'- -CuaGgUGGAGGaCCGCaa-GCuGUGGg -5'
31024 3' -56 NC_006560.1 + 4721 0.66 0.911781
Target:  5'- --cUCGCUgcgCCcGGCGg-CGACGCCCg -3'
miRNA:   3'- cuaGGUGGa--GGaCCGCaaGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 83980 0.66 0.911781
Target:  5'- cGGUUCGCCgcCCUGcuGCGggCGGCcgGCCCc -3'
miRNA:   3'- -CUAGGUGGa-GGAC--CGCaaGCUG--UGGG- -5'
31024 3' -56 NC_006560.1 + 5620 0.66 0.908184
Target:  5'- --cCCGCCUCauauaccccggccGGCGacgggCGGCGCCCg -3'
miRNA:   3'- cuaGGUGGAGga-----------CCGCaa---GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 147261 0.66 0.905738
Target:  5'- -cUCCugCUCCuccucUGGCGgcCGGgGCCg -3'
miRNA:   3'- cuAGGugGAGG-----ACCGCaaGCUgUGGg -5'
31024 3' -56 NC_006560.1 + 115863 0.66 0.899464
Target:  5'- ---gCGCUggcCCUGGCGccCGugGCCCg -3'
miRNA:   3'- cuagGUGGa--GGACCGCaaGCugUGGG- -5'
31024 3' -56 NC_006560.1 + 73617 0.66 0.899464
Target:  5'- --gCCGCCgaggaCCgggaGGUGcgCGGCGCCCu -3'
miRNA:   3'- cuaGGUGGa----GGa---CCGCaaGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 119945 0.66 0.89296
Target:  5'- --aCCACCcCCUGGCccccgCGcuccGCGCCCu -3'
miRNA:   3'- cuaGGUGGaGGACCGcaa--GC----UGUGGG- -5'
31024 3' -56 NC_006560.1 + 22689 0.66 0.89296
Target:  5'- cGcgCCGCCguggCCgGGCG--CGACGCCa -3'
miRNA:   3'- -CuaGGUGGa---GGaCCGCaaGCUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.