miRNA display CGI


Results 1 - 20 of 376 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 5' -65.1 NC_006560.1 + 67490 0.66 0.568002
Target:  5'- cGCGuuCCGUCGGCUCGagucGGcccGCGC-CGCc -3'
miRNA:   3'- -CGCu-GGCAGCCGGGC----CCc--CGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 3954 0.66 0.568002
Target:  5'- gGCGGCgaGggCGGCCgccaGGcGGCGCUgCGCg -3'
miRNA:   3'- -CGCUGg-Ca-GCCGGg---CCcCCGCGA-GCG- -5'
31024 5' -65.1 NC_006560.1 + 15186 0.66 0.568002
Target:  5'- aCGGgCGUCGcGCCCuccggcGGGGCGggaCUCGUu -3'
miRNA:   3'- cGCUgGCAGC-CGGGc-----CCCCGC---GAGCG- -5'
31024 5' -65.1 NC_006560.1 + 32925 0.66 0.568002
Target:  5'- gGgGGCCGagGGCa-GGGGGCcgUCGCc -3'
miRNA:   3'- -CgCUGGCagCCGggCCCCCGcgAGCG- -5'
31024 5' -65.1 NC_006560.1 + 118905 0.66 0.568002
Target:  5'- uGCGccauCCGcgCGGCCCuccaGGGGGCcCccCGCa -3'
miRNA:   3'- -CGCu---GGCa-GCCGGG----CCCCCGcGa-GCG- -5'
31024 5' -65.1 NC_006560.1 + 43957 0.66 0.568002
Target:  5'- cGCGcCCG-CgGGCCCGGGcguGGUGCcCGa -3'
miRNA:   3'- -CGCuGGCaG-CCGGGCCC---CCGCGaGCg -5'
31024 5' -65.1 NC_006560.1 + 57279 0.66 0.568002
Target:  5'- cGCGGCC-UCGGagagagcgccgCgGGGGGCGUccUCGUc -3'
miRNA:   3'- -CGCUGGcAGCCg----------GgCCCCCGCG--AGCG- -5'
31024 5' -65.1 NC_006560.1 + 130608 0.66 0.568002
Target:  5'- cGCGGCCGgccgcgCGGCUgGcGuGGGCccgGCUgGCc -3'
miRNA:   3'- -CGCUGGCa-----GCCGGgC-C-CCCG---CGAgCG- -5'
31024 5' -65.1 NC_006560.1 + 58100 0.66 0.568002
Target:  5'- cGCGGCCG-C-GCCCGacucGGGUGCggcCGCc -3'
miRNA:   3'- -CGCUGGCaGcCGGGCc---CCCGCGa--GCG- -5'
31024 5' -65.1 NC_006560.1 + 56690 0.66 0.567066
Target:  5'- cCGACCccaccacgGggGGCCCGGGugguGGCGCgaaaccgUCGCa -3'
miRNA:   3'- cGCUGG--------CagCCGGGCCC----CCGCG-------AGCG- -5'
31024 5' -65.1 NC_006560.1 + 45234 0.66 0.558663
Target:  5'- -aGACgCGggaGGgCCGGGGGgGCgucuguggCGCg -3'
miRNA:   3'- cgCUG-GCag-CCgGGCCCCCgCGa-------GCG- -5'
31024 5' -65.1 NC_006560.1 + 4409 0.66 0.558663
Target:  5'- cGCGG-CGUCGcccaGCUCGGgcgcccacacGGGCGCgggCGCg -3'
miRNA:   3'- -CGCUgGCAGC----CGGGCC----------CCCGCGa--GCG- -5'
31024 5' -65.1 NC_006560.1 + 6824 0.66 0.558663
Target:  5'- gGgGACCGggGGgaCCGGGGGCucacCUCGg -3'
miRNA:   3'- -CgCUGGCagCCg-GGCCCCCGc---GAGCg -5'
31024 5' -65.1 NC_006560.1 + 16270 0.66 0.558663
Target:  5'- gGCGGCgCGcgCGGagacggccgacCCCuGGGGCGCggcggggCGCg -3'
miRNA:   3'- -CGCUG-GCa-GCC-----------GGGcCCCCGCGa------GCG- -5'
31024 5' -65.1 NC_006560.1 + 76717 0.66 0.558663
Target:  5'- aGUcGCCGgCGGCCCuGGaGGCgGCgCGCg -3'
miRNA:   3'- -CGcUGGCaGCCGGGcCC-CCG-CGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 5354 0.66 0.558663
Target:  5'- gGCgGGCCGUC-GUCCGGGuccGGCGagccCGCg -3'
miRNA:   3'- -CG-CUGGCAGcCGGGCCC---CCGCga--GCG- -5'
31024 5' -65.1 NC_006560.1 + 44500 0.66 0.558663
Target:  5'- gGCGcCuCGUCaaGGCCCGGGcccuGGCGCgcaccuaccaCGCc -3'
miRNA:   3'- -CGCuG-GCAG--CCGGGCCC----CCGCGa---------GCG- -5'
31024 5' -65.1 NC_006560.1 + 122541 0.66 0.558663
Target:  5'- aGCGACUG-CGGgCCGGGuucucGCGgUgGCg -3'
miRNA:   3'- -CGCUGGCaGCCgGGCCCc----CGCgAgCG- -5'
31024 5' -65.1 NC_006560.1 + 77095 0.66 0.558663
Target:  5'- cGCcGCCGccCGcGCCCacaGGGGCGCggGCg -3'
miRNA:   3'- -CGcUGGCa-GC-CGGGc--CCCCGCGagCG- -5'
31024 5' -65.1 NC_006560.1 + 112 0.66 0.557732
Target:  5'- cGCGGCCG-CGGCCgGcgcggguuugggcGGGGCcgGCccCGCc -3'
miRNA:   3'- -CGCUGGCaGCCGGgC-------------CCCCG--CGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.