miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 3' -52.3 NC_006560.1 + 123786 0.66 0.986546
Target:  5'- cUGgcgUCggUGAcCGUGCCccgcgaGCUGAGGCCg -3'
miRNA:   3'- -ACaa-AG--ACU-GCAUGGag----UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 89904 0.66 0.986546
Target:  5'- ----cCUGACccGCCUCugCGAGcGCg -3'
miRNA:   3'- acaaaGACUGcaUGGAGugGCUC-CGg -5'
31025 3' -52.3 NC_006560.1 + 83707 0.66 0.986546
Target:  5'- ---cUUUGcGCGguucGCCggCGCCGGGGCCc -3'
miRNA:   3'- acaaAGAC-UGCa---UGGa-GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 60783 0.66 0.986546
Target:  5'- ------cGACGaagACCUgGCgGGGGCCg -3'
miRNA:   3'- acaaagaCUGCa--UGGAgUGgCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 60063 0.66 0.986546
Target:  5'- ------gGugG-ACUgCACCGAGGCCg -3'
miRNA:   3'- acaaagaCugCaUGGaGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 77238 0.66 0.986046
Target:  5'- ------aGGCGUACCUgAgggcgagcggagacCCGGGGCCc -3'
miRNA:   3'- acaaagaCUGCAUGGAgU--------------GGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 103883 0.66 0.982937
Target:  5'- gGggUCgaguACGUGCCcgaGCCGAuGGCCu -3'
miRNA:   3'- aCaaAGac--UGCAUGGag-UGGCU-CCGG- -5'
31025 3' -52.3 NC_006560.1 + 74101 0.66 0.982937
Target:  5'- cUGg--CUGGCGUcgcuggGCgaCGCCGcGGGCCa -3'
miRNA:   3'- -ACaaaGACUGCA------UGgaGUGGC-UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 115575 0.66 0.982937
Target:  5'- cGUggagcagCUGGCG-GCCgugaaCGCCGAGGUg -3'
miRNA:   3'- aCAaa-----GACUGCaUGGa----GUGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 52226 0.66 0.982937
Target:  5'- aGg--CUGGCGagcUGCCUgGCCccGGCCg -3'
miRNA:   3'- aCaaaGACUGC---AUGGAgUGGcuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 65030 0.66 0.980879
Target:  5'- ----aCUGACGgcCCggAgCGGGGCCg -3'
miRNA:   3'- acaaaGACUGCauGGagUgGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 23560 0.66 0.980879
Target:  5'- --cUUC-GGCGgcgACCUCGCCGccgugcccGGGCUg -3'
miRNA:   3'- acaAAGaCUGCa--UGGAGUGGC--------UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 72018 0.66 0.980879
Target:  5'- ----cCUGACGUACUaCAcccaggagcaccCCGAGGCg -3'
miRNA:   3'- acaaaGACUGCAUGGaGU------------GGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 89309 0.67 0.976216
Target:  5'- cGUUcCcGGCGggACCUCagacgGCCGGGGCg -3'
miRNA:   3'- aCAAaGaCUGCa-UGGAG-----UGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 22100 0.67 0.976216
Target:  5'- ------cGACGccgACCUCGCCGccGCCg -3'
miRNA:   3'- acaaagaCUGCa--UGGAGUGGCucCGG- -5'
31025 3' -52.3 NC_006560.1 + 141473 0.67 0.976216
Target:  5'- cGUUUCUGA-GUAgCUCGaggggcgUGGGGCCc -3'
miRNA:   3'- aCAAAGACUgCAUgGAGUg------GCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 131115 0.67 0.976216
Target:  5'- ----gCUGGCGgggGCCUgGcCCGcGGCCg -3'
miRNA:   3'- acaaaGACUGCa--UGGAgU-GGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 106876 0.67 0.976216
Target:  5'- aUGgacacgCUGGCGcgcacgccccgcUcgaacGCCUCgGCCGAGGCCa -3'
miRNA:   3'- -ACaaa---GACUGC------------A-----UGGAG-UGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 101200 0.67 0.976216
Target:  5'- cGcgUCgugGGCGgcgaugACCUCGCCGAccggGGUCg -3'
miRNA:   3'- aCaaAGa--CUGCa-----UGGAGUGGCU----CCGG- -5'
31025 3' -52.3 NC_006560.1 + 99312 0.67 0.976216
Target:  5'- gGUggggCgcgggGGCGUGCg-CGCCGAcGGCCg -3'
miRNA:   3'- aCAaa--Ga----CUGCAUGgaGUGGCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.